UC-423 Developing Support for DICOM medical Images

DICOM (Digital Imaging and Communications in Medicine) is the standard for storing and sharing medical image information. GIMP (GNU Image Manipulation Program) is the leading open-source program for processing professional and scientific images; however, it is currently unable to open many modern DICOM images. The project goal is to update GIMP\u27s DICOM import plugin with code to support all types of DICOM images. After creating a C++ wrapper to incorporate the GDCM (Grassroots DICOM) library into the existing software, GIMP could import images that previously caused errors. The updated plugin has been submitted as a merge request and is currently being reviewed by the developers for the next software release. The next step would be to expand GIMP\u27s DICOM metadata and display multi-frame images to continue to better support medical professionals and researchers

A note on the comparison of three near infrared reflectance spectroscopy calibration strategies for assessing herbage quality of ryegrass

peer-reviewedPerennial ryegrass (n = 1,836), Italian ryegrass (n = 137) and hybrid ryegrass (n = 103) herbage was taken from harvested plots from the Irish national variety evaluation scheme and analysed for in vitro dry matter digestibility, water soluble carbohydrate concentration, crude protein concentration and buffering capacity. Spectral data were obtained using near infrared reflectance spectroscopy and three calibration strategies (global, species-specific or local) were utilised to relate the reference values to the spectral data. The local strategy generally provided the poorest estimation of herbage composition, with global and species-specific calibration strategies producing similarly accurate estimates of each quality trait. The higher accuracy and easier maintenance of the global strategy make it the recommended calibration method for analysing quality of ryegrass.Department of Agriculture, Food and the Marine Research Stimulus Fund (07 526

The biting and predaceous midges of Guadeloupe (Diptera: Ceratopogonidae). I. Species of the subfamily Ceratopogoninae

We provide new records of biting and predaceous midges (Diptera: Ceratopogonidae) from Guadeloupe in the subfamily Ceratopogoninae, including descriptions and illustrations of three new predaceous species in the genera, Parabezzia Malloch, Stilobezzia Kieffer and Palpomyia Meigen, respectively, and the first records of the New World predaceous genus, Amerohelea Grogan and Wirth, from the Caribbean region. We also provide the first Guadeloupe records of the biting midges, Culicoides (Anilomyia) decor (Williston), C. (Avaritia) pusillus Lutz, C. (Drymodesmyia) bredini Wirth and Blanton, C. (D.) poikilonotus Macfie, C. (Haematomyidium) hoffmani Fox, C. (Hoffmania) insignis Lutz, C. rangeli Ortiz and Mirsa and C. trilineatus Fox, and the predaceous midges, Brachypogon (Brachypogon) bifidus Spinelli and Grogan, B. (B.) telesfordi Spinelli and Grogan, B. (B.) woodruffi Spinelli and Grogan, Monohelea maya Felippe-Bauer, Huerta and Ibáñez-Bernal, Stilobezzia (Stilobezzia) diminuta Lane and Forattini, S. (S.) thomsenae Wirth, Amerohelea galindoi Grogan and Wirth, Bezzia (Bezzia) flinti Spinelli and Wirth, B. (Homobezzia) venustula (Williston) and Palpomyia insularis Spinelli and Grogan

Comparison of herbage yield, nutritive value and ensilability traits of three ryegrass species evaluated for the Irish Recommended List

peer-reviewedThis study examined 169 of the newest varieties of three ryegrass species, perennial (Lolium perenne L.), Italian (Lolium multiflorum Lam.) and hybrid (Lolium boucheanum Kunth), from Recommended List trials in Ireland. The traits examined were yield, dry matter concentration, three nutritive value traits (in vitro dry matter digestibility, water-soluble carbohydrate on a dry matter basis and crude protein concentration) and two ensilability traits (buffering capacity and water soluble carbohydrate concentration on an aqueous phase basis). Varietal monocultures of each species underwent a six cut combined simulated grazing and silage management in each of two years following sowing. Perennial ryegrass yielded less than both other species in one-year-old swards, but less than only Italian ryegrass in two-year-old swards, but generally had the higher in vitro dry matter digestibility and crude protein values. Italian ryegrass displayed the most favourable ensilability characteristics of the three species with perennial ryegrass less favourable and hybrid ryegrass intermediate. Overall, despite the high yields and favourable nutritive value and ensilability traits recorded, the general differences between the three ryegrass species studied were in line with industry expectations. These findings justify assessing the nutritive value and ensilability of ryegrass species, in addition to yield, to allow farmers select species that match farming enterprise requirements.We acknowledge the Department of Agriculture, Food and the Marine for funding provided through the Research Stimulus Fund (07 526

Lactococcus lactis subsp. lactis as a natural anti-listerial agent in the mushroom industry

peer-reviewedMushroom growth substrates from different commercial producers of mushrooms (Agaricus bisporus) were screened for the presence of bacteria with potential for use as biocontrol agents for controlling Listeria monocytogenes in the mushroom production environment. Eight anti-listerial strains were isolated from different sources and all were identified using 16s rRNA gene sequencing as Lactococcus lactis subsp. lactis. Whole-genome sequencing of the Lc. lactis isolates indicated that strains from different sites and substrate types were highly similar. Colony MALDI-TOF mass spectrometry found that these strains were Nisin Z producers but inhibitory activity was highly influenced by the incubation conditions and was strain dependant. The biofilm forming ability of these strains was tested using a crystal violet assay and all were found to be strong biofilm formers. Growth of Lc. lactis subsp. lactis using mixed-biofilm conditions with L. monocytogenes on stainless steel resulted in a 4-log reduction of L. monocytogenes cell numbers. Additional sampling of mushroom producers showed that these anti-listerial Lc. lactis strains are commonly present in the mushroom production environment. Lc. lactis has a generally regarded as safe (GRAS) status and therefore has potential for use as an environmentally benign solution to control L. monocytogenes in order to prevent product contamination and to enhance consumer confidence in the mushroom industry

Exploring nicotinamide cofactor promiscuity in NAD(P)H-dependent flavin containing monooxygenases (FMOs) using natural variation within the phosphate binding loop. Structure and activity of FMOs from Cellvibrio sp. BR and Pseudomonas stutzeri NF13

Flavin-containing monooxygenases (FMOs) catalyse asymmetric oxidation reactions that have potential for preparative organic synthesis, but most use the more expensive, phosphorylated nicotinamide cofactor NADPH to reduce FAD to FADH2 prior to formation of the (hydro)peroxy intermediate required for substrate oxygenation. A comparison of the structures of NADPH-dependent FMO from Methylophaga aminisulfidivorans (mFMO) and SMFMO from Stenotrophomonas maltophilia, which is able to use both NADPH and NADH, suggested that the promiscuity of the latter enzyme may be due in part to the substitution of an Arg-Thr couple in the NADPH phosphate recognition site in mFMO, for a Gln-His couple in SMFMO (Jensen et al., 2012, Chembiochem, 13, 872-878). Natural variation within the phosphate binding region, and its influence on nicotinamide cofactor promiscuity, was explored through the cloning, expression, characterisation and structural studies of FMOs from Cellvibrio sp. BR (CFMO) and Pseudomonas stutzeri NF13 (PSFMO), which possess Thr-Ser and Gln-Glu in the putative phosphate recognition positions, respectively. CFMO and PSFMO displayed 5- and 1.5-fold greater activity, respectively, than SMFMO for the reduction of FAD with NADH, and were also cofactor promiscuous, displaying a ratio of activity with NADH:NADPH of 1.7:1 and 1:1.3, respectively. The structures of CFMO and PSFMO revealed the context of the phosphate binding loop in each case, and also clarified the structure of the mobile helix-loop-helix motif that appears to shield the FAD-binding pocket from bulk solvent in this class of FMOs, a feature that was absent from the structure of SMFMO

The Reality and Myth of the Superintendent Shortage: Implications for Research and Educational Policy

An examination of research findings on the perception of a precipitous decline in the quantity and quality of superintendent applicants was undertaken by leading scholars in the field and is reported in two consecutive issues of the Journal of School Leadership. We trust that this authoritative body of work adds to the knowledge base, informs the national debate, and will guide policy deliberations in the coming years. The intent of the authors of this brief end piece is to reflect on empirical findings as well as to introduce a number of provocative scholarly observations that will hopefully elevate and focus future policy debates

How Observations of Circumstellar Disk Asymmetries Can Reveal Hidden Planets: Pericenter Glow and its Application to the HR 4796 Disk

Recent images of the disks of dust around the young stars HR 4796A and Fomalhaut show, in each case, a double-lobed feature that may be asymmetric (one lobe may be brighter than the other). A symmetric double-lobed structure is that expected from a disk of dust with a central hole that is observed nearly edge-on (i.e., close to the plane of the disk). This paper shows how the gravitational influence of a second body in the system with an eccentric orbit would cause a brightness asymmetry in such a disk by imposing a "forced eccentricity" on the orbits of the constituent dust particles, thus shifting the center of symmetry of the disk away from the star and causing the dust near the forced pericenter of the perturbed disk to glow. Dynamic modeling of the HR 4796 disk shows that its 5% brightness asymmetry could be the result of a forced eccentricity as small as 0.02 imposed on the disk by either the binary companion HR 4796B, or by an unseen planet close to the inner edge of the disk. Since it is likely that a forced eccentricity of 0.01 or higher would be imposed on a disk in a system in which there are planets, but no binary companion, the corresponding asymmetry in the disk's structure could serve as a sensitive indicator of these planets that might otherwise remain undetected.Comment: 61 pages, 10 figures, accepted for publication in the Astrophysical Journal (scheduled for January 10, 2000

Dopamine promotes instrumental motivation, but reduces reward-related vigour.

We can be motivated when reward depends on performance, or merely by the prospect of a guaranteed reward. Performance-dependent (contingent) reward is instrumental, relying on an internal action-outcome model, whereas motivation by guaranteed reward may minimise opportunity cost in reward-rich environments. Competing theories propose that each type of motivation should be dependent on dopaminergic activity. We contrasted these two types of motivation with a rewarded saccade task, in patients with Parkinson's disease (PD). When PD patients were ON dopamine, they had greater response vigour (peak saccadic velocity residuals) for contingent rewards, whereas when PD patients were OFF medication, they had greater vigour for guaranteed rewards. These results support the view that reward expectation and contingency drive distinct motivational processes, and can be dissociated by manipulating dopaminergic activity. We posit that dopamine promotes goal-directed motivation, but dampens reward-driven vigour, contradictory to the prediction that increased tonic dopamine amplifies reward expectation