Yield losses caused by late blight (Phytophthora infestans (Mont.) de Bary) in potato crops in Ireland

peer-reviewedField experiments, using foliage blight susceptible cultivars, were conducted at Oak Park, Carlow from 1983 to 2007 to determine the loss in potato production caused by crop infection with Phytophthora infestans. In each of the 25 years an untreated control was compared with protectant and with systemic fungicide programmes to determine the effect of late blight on the defoliation percentage at the end of the season, the area under the disease progress curve, marketable tuber yield, total tuber yield and yield of blighted tubers. The earliest date of first recorded late blight was 22 June and the latest was 15 September, but in 15 of the 25 years, blight was first recorded between 17 July and 13 August. Disease reached epidemic proportions in all but 4 of the years. Yields varied considerably among years. The mean loss in total yield from not using a fungicide was 10.1 t/ha. Differences in yield were significant across the 25 seasons. No overall increase in aggressiveness of the pathogen could be detected over the 25-year period

Demonstration of Self-Updating Landslide Hazard Maps with Dynamic Crowd-Sourced Data in Rwanda

No abstract availabl

Distribution and incidence of viruses in Irish seed potato crops

peer-reviewedVirus diseases are of key importance in potato production and in particular for the production of disease-free potato seed. However, there is little known about the frequency and distribution of potato virus diseases in Ireland. Despite a large number of samples being tested each year, the data has never been collated either within or across years. Information from all known potato virus testing carried out in the years 2006–2012 by the Department of Agriculture Food and Marine was collated to give an indication of the distribution and incidence of potato virus in Ireland. It was found that there was significant variation between regions, varieties, years and seed classes. A definition of daily weather data suitable for aphid flight was developed, which accounted for a significant proportion of the variation in virus incidence between years. This use of weather data to predict virus risk could be developed to form the basis of an integrated pest management approach for aphid control in Irish potato crops

Introducing a New Cement Hydration and Microstructure Model

This paper presents a new cement hydration model to predict the microstructure evolution of hydrating tricalcium silicate (C3S). The model is written in MATLAB and employs the continuum approach and integrated particle kinetic relationships to show the change in C3S and the growth of Calcium Silicate Hydrate (C-S-H) and Calcium Hydroxide (CH) in the pore space over time. Cement hydration is a highly complex process. While hydration models should never completely remove experimental analysis, they are an aid to better understand cement hydration and microstructure development by providing a method to analyse a large number of pastes with different cementitious make-ups in a relatively short time. This model uses spherical particles to represent the C3S with customizable input files such as cumulative weight distributions (CWD), to determine the particle size distributions, PSD), w/c ratio, C3S, C-S-H and CH phase densities, kinetic rates, stiochiometries and enthalpy values. The current study presents simulated microstructures and demonstrates the versatility of the model, while still in the development stage, to simulate cement hydration and microstructure development over 100 days. With further development, it can become a flexible tool for both academia and industry that can easily incorporate the inclusion of supplementary cementitious materials etc

Cutoff in the Bernoulli-Laplace Model With Unequal Colors and Urn Sizes

We consider a generalization of the Bernoulli-Laplace model in which there are two urns and $n$ total balls, of which $r$ are red and $n - r$ white, and where the left urn holds $m$ balls. At each time increment, $k$ balls are chosen uniformly at random from each urn and then swapped. This system can be used to model phenomena such as gas particle interchange between containers or card shuffling. Under a reasonable set of assumptions, we bound the mixing time of the resulting Markov chain asymptotically in $n$ with cutoff at $\log{n}$ and constant window. Among other techniques, we employ the spectral analysis of arXiv:0906.4242 on the Markov transition kernel and the chain coupling tools of arXiv:2203.08647 and arXiv:1606.01437

Patterns of microchromosome organization remain highly conserved throughout avian evolution

The structure and organization of a species genome at a karyotypic level, and in interphase nuclei, have broad functional significance. Although regular sized chromosomes are studied extensively in this regard, microchromosomes, which are present in many terrestrial vertebrates, remain poorly explored. Birds have more cytologically indistinguishable microchromosomes (~ 30 pairs) than other vertebrates; however, the degree to which genome organization patterns at a karyotypic and interphase level differ between species is unknown. In species where microchromosomes have fused to other chromosomes, they retain genomic features such as gene density and GC content; however, the extent to which they retain a central nuclear position has not been investigated. In studying 22 avian species from 10 orders, we established that, other than in species where microchromosomal fusion is obvious (Falconiformes and Psittaciformes), there was no evidence of microchromosomal rearrangement, suggesting an evolutionarily stable avian genome (karyotypic) organization. Moreover, in species where microchromosomal fusion has occurred, they retain a central nuclear location, suggesting that the nuclear position of microchromosomes is a function of their genomic features rather than their physical size

Time lapse: A glimpse into prehistoric genomics

For the purpose of this review, ‘time-lapse’ refers to the reconstruction of ancestral (in this case dinosaur) karyotypes using genome assemblies of extant species. Such reconstructions are only usually possible when genomes are assembled to ‘chromosome level’ i.e. a a complete representation of all the sequences, correctly ordered contiguously on each of the chromosomes. Recent paleontological evidence is very clear that birds are living dinosaurs, the latest example of dinosaurs emerging from a catastrophic extinction event. Non-avian dinosaurs (ever present in the public imagination through art, and broadcast media) emerged some 240 million years ago and have displayed incredible phenotypic diversity. Here we report on our recent studies to infer the overall karyotype of the Theropod dinosaur lineage from extant avian chromosome level genome assemblies. Our work first focused on determining the likely karyotype of the avian ancestor (most likely a chicken-sized, two-legged, feathered, land dinosaur from the Jurassic period) finding karyotypic similarity to the chicken. We then took the work further to determine the likely karyotype of the bird-lizard ancestor and the chromosomal changes (chiefly translocations and inversions) that occurred between then and modern birds. A combination of bioinformatics and cross-species fluorescence in situ hybridization (zoo-FISH) uncovered a considerable number of translocations and fissions from a ‘lizard-like’ genome structure of 2n = 36–46 to one similar to that of soft-shelled turtles (2n = 66) from 275 to 255 million years ago (mya). Remarkable karyotypic similarities between some soft-shelled turtles and chicken suggests that there were few translocations from the bird-turtle ancestor (plus ∼7 fissions) through the dawn of the dinosaurs and pterosaurs, through the theropod linage and on to most to modern birds. In other words, an avian-like karyotype was in place about 240mya when the dinosaurs and pterosaurs first emerged. We mapped 49 chromosome inversions from then to the present day, uncovering some gene ontology enrichment in evolutionary breakpoint regions. This avian-like karyotype with its many (micro)chromosomes provides the basis for variation (the driver of natural selection) through increased random segregation and recombination. It may therefore contribute to the ability of dinosaurs to survive multiple extinction events, emerging each time as speciose and diverse