Generalized Pomeranchuk instabilities in graphene

We study the presence of Pomeranchuk instabilities induced by interactions on a Fermi liquid description of a graphene layer. Using a recently developed generalization of Pomeranchuk method we present a phase diagram in the space of fillings versus on-site and nearest neighbors interactions. Interestingly, we find that for both interactions being repulsive an instability region exists near the Van Hove filling, in agreement with earlier theoretical work. In contrast, near half filling, the Fermi liquid behavior appears to be stable, in agreement with theoretical results and experimental findings using ARPES. The method allows for a description of the complete phase diagram for arbitrary filling.Comment: 9 pages, 3 figure

Integration of SARS-CoV-2 RNA in infected human cells by retrotransposons: an unlikely hypothesis and old viral relationships

Zhang et al. (Proc Natl Acad Sci 118:e2105968118, 2021) recently reported that SARS-CoV-2 RNA can be retrotranscribed and integrated into the DNA of human cells by the L1 retrotransposon machinery. This phenomenon could cause persistence of viral sequences in patients and may explain the prolonged PCR-positivity of SARS-CoV-2 infected patients, even long after the phase of active virus replication has ended. This commentary does critically review the available data on this topic and discusses them in the context of findings made for other exogenous viruses and ancestral endogenous retroviral elements

Dyons in Nonabelian Born-Infeld Theory

We analyze a nonabelian extension of Born--Infeld action for the SU(2) group. In the class of spherically symmetric solutions we find that, besides the Gal'tsov--Kerner glueballs, only the analytic dyons have finite energy. The presented analytic and numerical investigation excludes the existence of pure magnetic monopoles of 't Hooft--Polyakov type.Comment: 12 pages, 3 figure

Prolonged activity of HERV-K(HML2) in Old World Monkeys accounts for recent integrations and novel recombinant variants

Around 8% of the human genome comprises Human Endogenous Retroviruses (HERVs) acquired over primate evolution. Some are specific to primates such as HERV-K, consisting of 10 HML subtypes and including the most recently acquired elements. Particularly, HML2 is the youngest clade, having some human-specific integrations, and while it has been widely described in humans its presence and distribution in non-human primates remain poorly characterized. To investigate HML2 distribution in non-human primates, the present study focused on the characterization of HML2 integrations in Macaca fascicularis and Macaca mulatta which are the most evolutionarily distant species related to humans in the Catarrhini parvorder. We identified overall 208 HML2 proviruses for M. fascicularis (77) and M. mulatta (131). Among them, 46 proviruses are shared by the two species while the others are species specific. Only 12 proviruses were shared with humans, confirming that the major wave of HML2 diffusion in humans occurred after macaques’ divergence. Phylogenetic analysis confirmed structural variations between HML2 macaques’ species-specific proviruses, and the ones shared between macaques and humans. The HML2 loci were characterized in terms of structure, focusing on potential residual open reading frames (ORFs) for gag, pol, and env genes for the latter being reported to be expressed in human pathological conditions. The analysis identified highly conserved gag and pol genes, while the env genes had a very divergent nature. Of the 208 HML2 proviral sequences present in Macaca species, 81 sequences form a cluster having a MER11A, a characteristic HML8 LTR sequence, insertion in the env region indicating a recombination event that occurred between the HML2 env gene and the HML8 LTR. This recombination event, which was shown to be present only in a subset of macaques’ shared sequences and species-specific sequences, highlights a recent viral activity leading to the emergence of an env variant specific to the Old World Monkeys (OWMs). We performed an exhaustive analysis of HML2 in two species of OWMs, in terms of its evolutionary history, structural features, and potential residual coding capacity highlighting recent activity of HML2 in macaques that occurred after its split from the Catarrhini parvorder, leading to the emergence of viral variants, hence providing a better understanding of the endogenization and diffusion of HML2 along primate evolution

Incidence of the boundary shape in the effective theory of fractional quantum Hall edges

Starting from a microscopic description of a system of strongly interacting electrons in a strong magnetic field in a finite geometry, we construct the boundary low energy effective theory for a fractional quantum Hall droplet taking into account the effects of a smooth edge. The effective theory obtained is the standard chiral boson theory (chiral Luttinger theory) with an additional self-interacting term which is induced by the boundary. As an example of the consequences of this model, we show that such modification leads to a non-universal reduction in the tunnelling exponent which is independent of the filling fraction. This is in qualitative agreement with experiments, that systematically found exponents smaller than those predicted by the ordinary chiral Luttinger liquid theory.Comment: 12 pages, minor changes, replaced by published versio

Retrotransposons as drivers of Mammalian brain evolution

Retrotransposons, a large and diverse class of transposable elements that are still active in humans, represent a remarkable force of genomic innovation underlying mammalian evolution. Among the features distinguishing mammals from all other vertebrates, the presence of a neocor-tex with a peculiar neuronal organization, composition and connectivity is perhaps the one that, by affecting the cognitive abilities of mammals, contributed mostly to their evolutionary success. Among mammals, hominids and especially humans display an extraordinarily expanded cortical volume, an enrichment of the repertoire of neural cell types and more elaborate patterns of neuronal connectivity. Retrotransposon-derived sequences have recently been implicated in multiple layers of gene regulation in the brain, from transcriptional and post-transcriptional control to both local and large-scale three-dimensional chromatin organization. Accordingly, an increasing variety of neurodevelopmental and neurodegenerative conditions are being recognized to be associated with retrotransposon dysregulation. We review here a large body of recent studies lending support to the idea that retrotransposon-dependent evolutionary novelties were crucial for the emergence of mammalian, primate and human peculiarities of brain morphology and function