Energy-dependent quenching adjusts the excitation diffusion length to regulate photosynthetic light harvesting

An important determinant of crop yields is the regulation of photosystem II (PSII) light harvesting by energy-dependent quenching (qE). However, the molecular details of excitation quenching have not been quantitatively connected to the PSII yield, which only emerges on the 100 nm scale of the grana membrane and determines flux to downstream metabolism. Here, we incorporate excitation dissipation by qE into a pigment-scale model of excitation transfer and trapping for a 200 nm x 200 nm patch of the grana membrane. We demonstrate that single molecule measurements of qE are consistent with a weak-quenching regime. Consequently, excitation transport can be rigorously coarse-grained to a 2D random walk with an excitation diffusion length determined by the extent of quenching. A diffusion-corrected lake model substantially improves the PSII yield determined from variable chlorophyll fluorescence measurements and offers an improved model of PSII for photosynthetic metabolism.Comment: 19 pages, 4 figures, 3 supplementary figure

Coarse Brownian Dynamics for Nematic Liquid Crystals: Bifurcation Diagrams via Stochastic Simulation

We demonstrate how time-integration of stochastic differential equations (i.e. Brownian dynamics simulations) can be combined with continuum numerical bifurcation analysis techniques to analyze the dynamics of liquid crystalline polymers (LCPs). Sidestepping the necessity of obtaining explicit closures, the approach analyzes the (unavailable in closed form) coarse macroscopic equations, estimating the necessary quantities through appropriately initialized, short bursts of Brownian dynamics simulation. Through this approach, both stable and unstable branches of the equilibrium bifurcation diagram are obtained for the Doi model of LCPs and their coarse stability is estimated. Additional macroscopic computational tasks enabled through this approach, such as coarse projective integration and coarse stabilizing controller design, are also demonstrated

Multi-Brane Worlds and modification of gravity at large scales

We discuss the implications of multi-brane constructions involving combinations of positive and negative tension brane and show how anomalously light KK states emerge when negative tension ''-'' branes are sandwiched between ''+'' branes. We present a detailed study of a ''+--+'' brane assignment which interpolates between two models that have been previously proposed in which gravity is modified at large scales due to the anomalously light states. We show that it has the peculiar characteristic that gravity changes from four dimensional (4D) to 5D at large distances and returns to 4D at even larger scales. We also consider a crystalline universe which leads to a similar structure for gravity. The problems associated with intermediate negative tension branes are discussed and a possible resolution suggested.Comment: 28 pages, 6 figures,references adde

Brane Universe and Multigravity: Modification of gravity at large and small distances

We consider a modification of gravity at large distances in a Brane Universe which was discussed recently. In these models the modification of gravity at large distances is ultimately connected to existence of negative tension brane(s) and exponentially small tunneling factor. We discuss a general model which interpolates between Bi-gravity model and GRS model. We also discuss the possible mechanism of stabilization for negative tension branes in AdS background. Finally we show that extra degrees of freedom of massive gravitons do not lead to disastrous contradiction with General Relativity if the stabilization condition $\int dy \sqrt{-G^{(5)}} (T^\mu_\mu-2T^5_5)=0$ is implemented.Comment: 12 pages, 4 eps figures, LaTe

Defect flows in minimal models

In this paper we study a simple example of a two-parameter space of renormalisation group flows of defects in Virasoro minimal models. We use a combination of exact results, perturbation theory and the truncated conformal space approach to search for fixed points and investigate their nature. For the Ising model, we confirm the recent results of Fendley et al. In the case of central charge close to one, we find six fixed points, five of which we can identify in terms of known defects and one of which we conjecture is a new non-trivial conformal defect. We also include several new results on exact properties of perturbed defects and on the renormalisation group in the truncated conformal space approach.Comment: 35 pages, 21 figures. 1 reference adde