Impact of the capillary pressure-saturation pore-size distribution parameter on geological carbon sequestration estimates

Cost estimates for geologic carbon sequestration (GCS) are vital for policy and decision makers evaluating carbon capture and storage strategies. Numerical models are often used in feasibility studies for the different stages of carbon injection and redistribution. Knowledge of the capillary pressure-saturation function for a selected storage rock unit is essential in applications used for simulating multiphase fluid flow and transport. However, the parameters describing these functions (e.g. the van Genuchten m pore size distribution parameter) are often not measured or neglected compared to other physical properties such as porosity and intrinsic permeability. In addition, the use of average instead of point estimates of m for numerical simulations of flow and transport can result in significant errors, especially in the case of coarse-grained sediments and fractured rocks. Such erroneous predictions can pose great risks and challenges to decision-making. We present a comparison of numerical simulation results based on average and point estimates of the van Genuchten m parameter for different porous media. Forward numerical simulations using the STOMP code were employed to illustrate the magnitudes of the differences in carbon sequestration predictions resulting from the use of height-averaged instead of point parameters. The model predictions were converted into cost estimates and the results indicate that varying m values in GCS modeling can cause cost differences of up to hundreds of millions dollars

Simple sequence repeat variation in the Daphnia pulex genome

Background: Simple sequence repeats (SSRs) are highly variable features of all genomes. Their rapid evolution makes them useful for tracing the evolutionary history of populations and investigating patterns of selection and mutation across gnomes. The recently sequenced Daphnia pulex genome provides us with a valuable data set to study the mode and tempo of SSR evolution, without the inherent biases that accompany marker selection. Results: Here we catalogue SSR loci in the Daphnia pulex genome with repeated motif sizes of 1-100 nucleotides with a minimum of 3 perfect repeats. We then used whole genome shotgun reads to determine the average heterozygosity of each SSR type and the relationship that it has to repeat number, motif size, motif sequence, and distribution of SSR loci. We find that SSR heterozygosity is motif specific, and positively correlated with repeat number as well as motif size. For non-repeat unit polymorphisms, we identify a motif-dependent end-nucleotide polymorphism bias that may contribute to the patterns of abundance for specific homopolymers, dimers, and trimers. Our observations confirm the high frequency of multiple unit variation (multistep) at large microsatellite loci, and further show that the occurrence of multiple unit variation is dependent on both repeat number and motif size. Using the Daphnia pulex genetic map, we show a positive correlation between dimer and trimer frequency and recombination. Conclusions: This genome-wide analysis of SSR variation in Daphnia pulex indicates that several aspects of SSR variation are motif dependent and suggests that a combination of unit length variation and end repeat biased base substitution contribute to the unique spectrum of SSR repeat loci

Impact of the capillary pressure-saturation pore-size distribution parameter on geological carbon sequestration estimates

Cost estimates for geologic carbon sequestration (GCS) are vital for policy and decision makers evaluating carbon capture and storage strategies. Numerical models are often used in feasibility studies for the different stages of carbon injection and redistribution. Knowledge of the capillary pressure-saturation function for a selected storage rock unit is essential in applications used for simulating multiphase fluid flow and transport. However, the parameters describing these functions (e.g. the van Genuchten m pore size distribution parameter) are often not measured or neglected compared to other physical properties such as porosity and intrinsic permeability. In addition, the use of average instead of point estimates of m for numerical simulations of flow and transport can result in significant errors, especially in the case of coarse-grained sediments and fractured rocks. Such erroneous predictions can pose great risks and challenges to decision-making. We present a comparison of numerical simulation results based on average and point estimates of the van Genuchten m parameter for different porous media. Forward numerical simulations using the STOMP code were employed to illustrate the magnitudes of the differences in carbon sequestration predictions resulting from the use of height-averaged instead of point parameters. The model predictions were converted into cost estimates and the results indicate that varying m values in GCS modeling can cause cost differences of up to hundreds of millions dollars

Genetics of incipient speciation in Drosophila mojavensis. I. Male courtship song, mating success, and genotype X environment interactions

Few studies have examined genotype by environment (GxE) effects on premating reproductive isolation and associated behaviors, even though such effects may be common when speciation is driven by adaptation to different environments. In this study, mating success and courtship song differences among diverging populations of Drosophila mojavensis were investigated in a two-environment quantitative trait locus (QTL) analysis. Baja California and mainland Mexico populations of D. mojavensis feed and breed on different host cacti, so these host plants were used to culture F-2 males to examine host-specific QTL effects and GxE interactions influencing mating success and courtship songs. Linear selection gradient analysis showed that mainland females mated with males that produced songs with significantly shorter L(long)-IPIs, burst durations, and interburst intervals. Twenty-one microsatellite loci distributed across all five major chromosomes were used to localize effects of mating success, time to copulation, and courtship song components. Male courtship success was influenced by a single detected QTL, the main effect of cactus, and four GxE interactions, whereas time to copulation was influenced by three different QTLs on the fourth chromosome. Multiple-locus restricted maximum likelihood (REML) analysis of courtship song revealed consistent effects linked with the same fourth chromosome markers that influenced time to copulation, a number of GxE interactions, and few possible cases of epistasis. GxE interactions for mate choice and song can maintain genetic variation in populations, but alter outcomes of sexual selection and isolation, so signal evolution and reproductive isolation may be slowed in diverging populations. Understanding the genetics of incipient speciation in D. mojavensis clearly depends on cactus-specific expression of traits associated with courtship behavior and sexual isolation