Purification and biochemical/molecular characterisation of antimicrobial peptides produced by Saccharomyces cerevisiae and evaluation of their mode of action

Tese apresentada para obtenção do Grau de Doutor em Engenharia AlimentarABSTRACT: The antagonistic effect exerted by Saccharomyces cerevisiae against other microbial species during wine fermentations was recently ascribed to its capacity to secrete antimicrobial peptides (AMPs). The main goal of the present work was to purify, identify and characterize those AMPs. Firstly, the AMPs were purified by means of chromatographic techniques (size-exclusion and ion-exchange) and then characterized regarding their amino acid sequence, codifying genes and antimicrobial/biochemical properties. Analysis of the purified AMPs by mass spectrometry revealed that the natural biocide is mainly composed by two peptides (AMP1 and AMP2/3) derived from the isoenzymes of the glycolytic protein glyceraldehyde 3-phosphate dehydrogenase (GAPDH). The spectrum of action of the naturally-excreted AMPs, which we named saccharomycin, is wide and includes several wine-related non-Saccharomyces yeasts, such as Hanseniaspora guilliermondii, Torulaspora delbrueckii, Kluyveromyces marxianus, Lachancea thermotolerans and Dekkera bruxellensis, as well as bacteria such as Oenococcus oeni. The antimicrobial effect of saccharomycin is significantly higher than that of synthetic analogues (AMP1 and AMP2/3) and depends on their complementary action and relative proportion. The mode of action of the AMPs was evaluated against sensitive yeast cells. The AMPs induce cell membrane permeabilization, loss of pH homeostasis and increase/decrease of H+-influx/-efflux. They also induce cell molecular markers typical of death by apoptosis in H. guilliermondii. Our work also revealed the accumulation of these GAPDH-derived peptides on the surface of stationary-grown (48 h) cells of S. cerevisiae, which induce death of non-Saccharomyces yeasts (H. guilliermondii and L. thermotolerans) by direct cell-cell contact. Finally, S. cerevisiae strains over-expressing these AMPs prevented growth of D. bruxellensis in co-fermentations, decreasing the levels of sulphur dioxide needed to control wine spoilage. Thus, the potential of these AMPs to be used as biopreservative in wine seems promising.RESUMO: O efeito antagónico de Saccharomyces cerevisiae contra outras espécies microbianas durante fermentações vínicas foi recentemente atribuído à sua capacidade de excretar péptidos antimicrobianos (PAMs). O principal objetivo do presente estudo foi purificar, identificar e caracterizar estes PAMs. Primeiramente, os PAMs foram purificados por técnicas cromatográficas (exclusão molecular e permuta iónica) e posteriormente caracterizados quanto à sua sequência de aminoácidos, aos genes que os codificam e às suas propriedades antimicrobianas/bioquímicas. Os PAMs purificados foram, em seguida, analisados por espectrometria de massa, revelando que o biocida natural é composto maioritariamente por dois PAMs (PAM1 e PAM2/3) originários das três isoenzimas da proteína glicolítica gliceraldeído-3-fosfato desidrogenase. O espectro de ação dos PAMs naturais, os quais designámos por saccharomycin, é amplo e inclui várias leveduras vínicas, tais como Hanseniaspora guilliermondii, Torulaspora delbrueckii, Kluyveromyces marxianus, Lachancea thermotolerans e Dekkera bruxellensis, assim como a bactéria vínica Oenococcus oeni. O efeito antimicrobiano de saccharomycin é bastante mais acentuado do que o efeito dos análogos quimicamente sintetizados (PAM1 e PAM2/3) e depende da sua ação complementar, assim como da sua proporção relativa. O modo de ação dos PAMs foi analisado em leveduras sensíveis, verificando-se que estes induzem permeabilização da membrana celular, perda da homeostase do pH e aumento/decréscimo do influxo/efluxo de H+. Verificou-se igualmente, que os PAMs induzem morte por apoptose em H. guilliermondii. Descobrimos, ainda, que estes PAMs se acumulam na superfície de células estacionárias (48 h) de S. cerevisiae, as quais são capazes de induzir a morte de leveduras não-Saccharomyces (H. guilliermondii e L. thermotolerans) por contacto celular direto. Por fim, uma estirpe laboratorial de S. cerevisiae foi manipulada geneticamente de forma a sobre-expressar cada um dos PAMs, verificando-se que as estirpes manipuladas apresentaram um elevado efeito antimicrobiano contra D. bruxellensis, o que permitiu reduzir os níveis de dióxido de enxofre normalmente aplicados em vinhos. Assim, a utilização destes PAMs como um bioconservante alternativo no vinho parece promissora.N/

Measurement of inclusive π0\pi^{0} production in hadronic Z0Z^{0} decays

An analysis is presented of inclusive \pi^0 production in Z^0 decays measured with the DELPHI detector. At low energies, \pi^0 decays are reconstructed by \linebreak using pairs of converted photons and combinations of converted photons and photons reconstructed in the barrel electromagnetic calorimeter (HPC). At high energies (up to x_p = 2 \cdot p_{\pi}/\sqrt{s} = 0.75) the excellent granularity of the HPC is exploited to search for two-photon substructures in single showers. The inclusive differential cross section is measured as a function of energy for {q\overline q} and {b \bar b} events. The number of \pi^0's per hadronic Z^0 event is N(\pi^0)/ Z_{had}^0 = 9.2 \pm 0.2 \mbox{(stat)} \pm 1.0 \mbox{(syst)} and for {b \bar b}~events the number of \pi^0's is {\mathrm N(\pi^0)/ b \overline b} = 10.1 \pm 0.4 \mbox{(stat)} \pm 1.1 \mbox{(syst)} . The ratio of the number of \pi^0's in b \overline b events to hadronic Z^0 events is less affected by the systematic errors and is found to be 1.09 \pm 0.05 \pm 0.01. The measured \pi^0 cross sections are compared with the predictions of different parton shower models. For hadronic events, the peak position in the \mathrm \xi_p = \ln(1/x_p) distribution is \xi_p^{\star} = 3.90^{+0.24}_{-0.14}. The average number of \pi^0's from the decay of primary \mathrm B hadrons is found to be {\mathrm N} (B \rightarrow \pi^0 \, X)/\mbox{B hadron} = 2.78 \pm 0.15 \mbox{(stat)} \pm 0.60 \mbox{(syst)}

Search for Neutral Heavy Leptons Produced in Z Decays

Weak isosinglet Neutral Heavy Leptons ($\nu_m$) have been searched for using data collected by the DELPHI detector corresponding to $3.3\times 10^{6}$ hadronic~Z$^{0}$ decays at LEP1. Four separate searches have been performed, for short-lived $\nu_m$ production giving monojet or acollinear jet topologies, and for long-lived $\nu_m$ giving detectable secondary vertices or calorimeter clusters. No indication of the existence of these particles has been found, leading to an upper limit for the branching ratio $BR($Z$^0\rightarrow \nu_m \overline{\nu})$ of about $1.3\times10^{-6}$ at 95\% confidence level for $\nu_m$ masses between 3.5 and 50 GeV/$c^2$. Outside this range the limit weakens rapidly with the $\nu_m$ mass. %Special emphasis has been given to the search for monojet--like topologies. One event %has passed the selection, in agreement with the expectation from the reaction: %$e^+e^- \rightarrow\ell \bar\ell \nu\bar\nu$. The results are also interpreted in terms of limits for the single production of excited neutrinos

Measurements of the leptonic branching fractions of the τ\tau

Data collected with the DELPHI detector from 1993 to 1995 combined with previous DELPHI results for data from 1991 and 1992 yield the branching fractions B({\tau \rightarrow \mbox{\rm e} \nu \bar{\nu}}) = (17.877 \pm 0.109_{stat} \pm 0.110_{sys} )\% and $B({\tau \rightarrow \mu \nu \bar{\nu}}) = (17.325 \pm 0.095_{stat} \pm 0.077_{sys} )\%$

Investigation of the splitting of quark and gluon jets

The splitting processes in identified quark and gluon jets are investigated using longitudinal and transverse observables. The jets are selected from symmetric three-jet events measured in Z decays with the Delphi detector in 1991-1994. Gluon jets are identified using heavy quark anti-tagging. Scaling violations in identified gluon jets are observed for the first time. The scale energy dependence of the gluon fragmentation function is found to be about two times larger than for the corresponding quark jets, consistent with the QCD expectation TeX . The primary splitting of gluons and quarks into subjets agrees with fragmentation models and, for specific regions of the jet resolution TeX , with NLLA calculations. The maximum of the ratio of the primary subjet splittings in quark and gluon jets is TeX . Due to non-perturbative effects, the data are below the expectation at small TeX . The transition from the perturbative to the non-perturbative domain appears at smaller TeX for quark jets than for gluon jets. Combined with the observed behaviour of the higher rank splittings, this explains the relatively small multiplicity ratio between gluon and quark jets

Measurement of the Quark and Gluon Fragmentation Functions in Z0Z^0 Hadronic Decays

The fragmentation functions and multiplicities in $b\overline{b}$ and light quark events are compared. The measured transverse and longitudinal components of the fragmentation function allow the gluon fragmentation function to be evaluated

Energy dependence of the differences between the quark and gluon jet fragmentation

Three jet events arising from decays of the Z boson, collected by the DELPHI detector, were used to measure differences in quark and gluon fragmentation. Gluon jets were anti-tagged by identifying b quark jets. Unbiased quark jets came from events with two jets plus one photon. Quark and gluon jet properties in different energy ranges were compared for the first time within the same detector. Quark and gluon jets of nearly the same energy in symmetric three jet event topologies were also compared. Using three independent methods, the average value of the ratio of the mean charged multiplicities of gluon and quark jets is $$=1.241\pm 0.015\ (stat.) \pm 0.025\ (syst.).$$ Gluon jets are broader and produce fragments with a softer energy spectrum than quark jets of equivalent energy. The string effect has been observed in fully symmetric three jet events. The measured ratio R_{\gamma} of the charged particle flow in the q\overline{q} inter-jet region of the q\bar{q}g and q\bar{q}\gamma samples agrees with the perturbative QCD expectation. The dependence of the mean charged multiplicity on the hadronic center-of-mass energy was analysed in photon plus n-jet events. The value for \alpha_s(M_Z) determined from these data using a QCD prediction with corrections at leading and next-to-leading order is \[ \alpha_s(M_Z)=0.116 \pm 0.003\ (stat.) \pm 0.009\ (syst.). \

Measurement of the Bd0^{0}_{d} oscillation frequency using kaons, leptons and jet charge

A measurement of the mass difference, \Delta m_d, between the two physical \mbox{B}^0_d states has been obtained from the analysis of the impact parameter distribution of a lepton emitted at large transverse momentum (p_t) relative to the jet axis and from the analysis of the flight distance distribution of secondary vertices tagged by either a high p_t lepton or an identified kaon. In the opposite hemisphere of the event, the charge of the initial quark has been evaluated using a high p_t lepton, a charged kaon or the mean jet charge. With 1.7 million hadronic Z^0 decays recorded by DELPHI between 1991 and 1993, \Delta m_d is found to be: \Delta m_d = 0.531^{+0.050}_{-0.046} ~(stat.) \pm 0.078 ~(syst.) ~ {\mathrm{ps}}^{-1} \,

Search for scalar fermions and long-lived scalar leptons at centre-of-mass energies of 130 GeV to 172 GeV

Data taken by DELPHI during the 1995 and 1996 LEP runs have been used to search for the supersymmetric partners of electron, muon and tau leptons and of top and bottom quarks. The observations are in agreement with standard model predictions. Limits are set on sfermion masses. Searches for long lived scalar leptons from low scale supersymmetry breaking models exclude stau masses below 55~GeV/c$^2$ at the 95\% confidence level, irrespective of the gravitino mass