34 research outputs found
A low-altitude new location for Equisetum palustre L. (Equisetales: Equisetaceae) in Jaén province (Spain)
Se presenta una nueva localidad de Equisetum palustre L. en el macizo de Cazorla-Segura, Jaén. Con una altitud de 460 msnm, este enclave difiere de las localidades previamente conocidas en esta zona, todas ellas situadas en ambientes montanos. La pre- sencia de E. palustre a baja altitud plantea dudas sobre la distribu- ción y abundancia real de esta especie en Andalucía, donde goza de protección legal
Role of Aromatic Rings in the Molecular Recognition of Aminoglycoside Antibiotics: Implications for Drug Design
Multivariate Statistical Analysis of Mass Spectra as a Tool for the Classification of the Main Humic Substances According to Their Structural and Conformational Features
Selective Detection and Inhibition of Active Caspase‑3 in Cells with Optimized Peptides
Caspases
are a family of cysteine-aspartyl proteases that are well
recognized for their essential roles in apoptosis and inflammation.
Recently, caspases have also been linked to the promotion of other
biologically important phenomena, such as cellular differentiation
and proliferation. Dysregulation of the multifaceted and indispensable
activities of caspases has been globally linked to several diseases,
including cancer and neurodegenerative disorders; however, the specific
caspase members responsible for these diseases have yet to be assigned.
Activity-based probes (ABPs) and peptide-based inhibitors are instrumental
in the detection and control of protease activity and serve as alternative
methods to genetic approaches. Such molecules aid in the interrogation
of specific proteases within cellular and animal models as well as
help elucidate aberrant proteolytic function correlated to disease
phenotypes. No ABPs or inhibitors have been discovered that specifically
target one of the eleven human caspases in a cellular context. Therefore,
ascribing distinct contributions to an individual caspase activity
within naturally occurring biological systems is not possible. Herein,
we describe a peptide series optimized for the selective detection
and inhibition of active caspase-3 in cells. These compounds exhibit
low nanomolar potency against caspase-3 with >120-fold selectivity
over caspase-7 which shares 77% active site identity. Our ability
to individually target wild-type active caspase-3 for detection and
cell permeable inhibition is a valuable proof-of-concept methodology
that can be readily employed to probe the significance of caspase-3
in apoptosis, neurological disorders, cardiovascular diseases, and
sepsis
Selective Detection of Caspase‑3 versus Caspase‑7 Using Activity-Based Probes with Key Unnatural Amino Acids
Caspases are required for essential
biological functions, most
notably apoptosis and pyroptosis, but also cytokine production, cell
proliferation, and differentiation. One of the most well studied members
of this cysteine protease family includes executioner caspase-3, which
plays a central role in cell apoptosis and differentiation. Unfortunately,
there exists a dearth of chemical tools to selectively monitor caspase-3
activity under complex cellular and <i>in vivo</i> conditions
due to its close homology with executioner caspase-7. Commercially
available activity-based probes and substrates rely on the canonical
DEVD tetrapeptide sequence, which both caspases-3 and -7 recognize
with similar affinity, and thus the individual contributions of caspase-3
and/or -7 toward important cellular processes are irresolvable. Here,
we analyzed a variety of permutations of the DEVD peptide sequence
in order to discover peptides with biased activity and recognition
of caspase-3 versus caspases-6, -7, -8, and -9. Through this study,
we identify fluorescent and biotinylated probes capable of selective
detection of caspase-3 using key unnatural amino acids. Likewise,
we determined the X-ray crystal structures of caspases-3, -7, and
-8 in complex with our lead peptide inhibitor to elucidate the binding
mechanism and active site interactions that promote the selective
recognition of caspase-3 over other highly homologous caspase family
members
Por D. Iuana Zapata Osorio condesa de Casarrubios, viuda de D. Gonçalo Chacon, conde que fue dela [sic] dicha villa. Con el señor Lic. D. Iuan Gonçalez, Cauallero dela Orden de Santiago, del Consejo y Camara de Indias de su Magestad, como marido de la
A 109/116(04
Identification and Co-complex Structure of a New <i>S. pyogenes</i> SpeB Small Molecule Inhibitor
The secreted <i>Streptococcus
pyogenes</i> cysteine protease
SpeB is implicated in host immune system evasion and bacterial virulence.
We present a small molecule inhibitor of SpeB <b>2477</b> identified
from a high-throughput screen based on the hydrolysis of a fluorogenic
peptide substrate Ac-AIK-AMC. <b>2477</b> inhibits other SpeB-related
proteases but not human caspase-3, suggesting that the molecule targets
proteases with the papain-like structural fold. A 1.59 Å X-ray
crystal structure of <b>2477</b> bound to the SpeB active site
reveals the mechanism of inhibition and the essential constituents
of <b>2477</b> necessary for binding. An assessment against
a panel of <b>2477</b> derivatives confirms our structural findings
and shows that a carbamate and nitrile on <b>2477</b> are required
for SpeB inhibition, as these moieties provide an extensive network
of electrostatic and hydrogen-bonding interactions with SpeB active
site residues. Surprisingly, despite <b>2477</b> having a reduced
inhibitory potential against papain, the majority of <b>2477</b>-related compounds inhibit papain to a much greater and broader extent
than SpeB. These findings indicate that SpeB is more stringently selective
than papain for this panel of small molecule inhibitors. On the basis
of our structural and biochemical characterization, we propose modifications
to <b>2477</b> for subsequent rounds of inhibitor design that
will impart specificity to SpeB over other papain-like proteases,
including alterations of the compound to exploit the differences in
CA protease active site pocket sizes and electrostatics
Discovery of a Highly Selective Caspase‑3 Substrate for Imaging Live Cells
Caspases are a family of cysteine
proteases that are well-known
for their roles in apoptosis and inflammation. Recent studies provide
evidence that caspases are also integral to many additional cellular
processes, such as differentiation and proliferation. Likewise, aberrant
caspase activity has been implicated in the progression of several
diseases, including neurodegenerative disorders, cancer, cardiovascular
disease, and sepsis. These observations establish the importance of
caspases to a diverse array of physiological functions and future
endeavors will undoubtedly continue to elucidate additional processes
that require caspase activity. Unfortunately, the existence of 11
functional human caspases, with overlapping substrate specificities,
confounds the ability to confidently assign one or more isoforms to
biological phenomena. Herein, we characterize a first-in-class FRET
substrate that is selectively recognized by active caspase-3 over
other initiator and executioner caspases. We further apply this substrate
to specifically image caspase-3 activity in live cells undergoing
apoptosis