Predictability sieve, pointer states, and the classicality of quantum trajectories

We study various measures of classicality of the states of open quantum systems subject to decoherence. Classical states are expected to be stable in spite of decoherence, and are thought to leave conspicuous imprints on the environment. Here these expected features of environment-induced superselection (einselection) are quantified using four different criteria: predictability sieve (which selects states that produce least entropy), purification time (which looks for states that are the easiest to find out from the imprint they leave on the environment), efficiency threshold (which finds states that can be deduced from measurements on a smallest fraction of the environment), and purity loss time (that looks for states for which it takes the longest to lose a set fraction of their initial purity). We show that when pointer states -- the most predictable states of an open quantum system selected by the predictability sieve -- are well defined, all four criteria agree that they are indeed the most classical states. We illustrate this with two examples: an underdamped harmonic oscillator, for which coherent states are unanimously chosen by all criteria, and a free particle undergoing quantum Brownian motion, for which most criteria select almost identical Gaussian states (although, in this case, predictability sieve does not select well defined pointer states.)Comment: 10 pages, 13 figure

Cdc53p acts in concert with Cdc4p and Cdc34p to control the G1 to S phase transition and identifies a conserved family of proteins

Regulation of cell cycle progression occurs in part through the targeted degradation of both activating and inhibitory subunits of the cyclin-dependent kinases. During G1, CDC4, encoding a WD-40 repeat protein, and CDC34, encoding a ubiquitin-conjugating enzyme, are involved in the destruction of these regulators. Here we describe evidence indicating that CDC53 also is involved in this process. Mutations in CDC53 cause a phenotype indistinguishable from those of cdc4 and cdc34 mutations, numerous genetic interactions are seen between these genes, and the encoded proteins are found physically associated in vivo. Cdc53p defines a large family of proteins found in yeasts, nematodes, and humans whose molecular functions are uncharacterized. These results suggest a role for this family of proteins in regulating cell cycle proliferation through protein degradation

Human gene copy number spectra analysis in congenital heart malformations

The clinical significance of copy number variants (CNVs) in congenital heart disease (CHD) continues to be a challenge. Although CNVs including genes can confer disease risk, relationships between gene dosage and phenotype are still being defined. Our goal was to perform a quantitative analysis of CNVs involving 100 well-defined CHD risk genes identified through previously published human association studies in subjects with anatomically defined cardiac malformations. A novel analytical approach permitting CNV gene frequency “spectra” to be computed over prespecified regions to determine phenotype-gene dosage relationships was employed. CNVs in subjects with CHD (n = 945), subphenotyped into 40 groups and verified in accordance with the European Paediatric Cardiac Code, were compared with two control groups, a disease-free cohort (n = 2,026) and a population with coronary artery disease (n = 880). Gains (≥200 kb) and losses (≥100 kb) were determined over 100 CHD risk genes and compared using a Barnard exact test. Six subphenotypes showed significant enrichment (P ≤ 0.05), including aortic stenosis (valvar), atrioventricular canal (partial), atrioventricular septal defect with tetralogy of Fallot, subaortic stenosis, tetralogy of Fallot, and truncus arteriosus. Furthermore, CNV gene frequency spectra were enriched (P ≤ 0.05) for losses at: FKBP6, ELN, GTF2IRD1, GATA4, CRKL, TBX1, ATRX, GPC3, BCOR, ZIC3, FLNA and MID1; and gains at: PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, HRAS, GATA6 and RUNX1. Of CHD subjects, 14% had causal chromosomal abnormalities, and 4.3% had likely causal (significantly enriched), large, rare CNVs. CNV frequency spectra combined with precision phenotyping may lead to increased molecular understanding of etiologic pathways

Physical interpretation of stochastic Schroedinger equations in cavity QED

We propose physical interpretations for stochastic methods which have been developed recently to describe the evolution of a quantum system interacting with a reservoir. As opposed to the usual reduced density operator approach, which refers to ensemble averages, these methods deal with the dynamics of single realizations, and involve the solution of stochastic Schr\"odinger equations. These procedures have been shown to be completely equivalent to the master equation approach when ensemble averages are taken over many realizations. We show that these techniques are not only convenient mathematical tools for dissipative systems, but may actually correspond to concrete physical processes, for any temperature of the reservoir. We consider a mode of the electromagnetic field in a cavity interacting with a beam of two- or three-level atoms, the field mode playing the role of a small system and the atomic beam standing for a reservoir at finite temperature, the interaction between them being given by the Jaynes-Cummings model. We show that the evolution of the field states, under continuous monitoring of the state of the atoms which leave the cavity, can be described in terms of either the Monte Carlo Wave-Function (quantum jump) method or a stochastic Schr\"odinger equation, depending on the system configuration. We also show that the Monte Carlo Wave-Function approach leads, for finite temperatures, to localization into jumping Fock states, while the diffusion equation method leads to localization into states with a diffusing average photon number, which for sufficiently small temperatures are close approximations to mildly squeezed states.Comment: 12 pages RevTeX 3.0 + 6 figures (GIF format; for higher-resolution postscript images or hardcopies contact the authors.) Submitted to Phys. Rev.

State and dynamical parameter estimation for open quantum systems

Following the evolution of an open quantum system requires full knowledge of its dynamics. In this paper we consider open quantum systems for which the Hamiltonian is ``uncertain''. In particular, we treat in detail a simple system similar to that considered by Mabuchi [Quant. Semiclass. Opt. 8, 1103 (1996)]: a radiatively damped atom driven by an unknown Rabi frequency $\Omega$ (as would occur for an atom at an unknown point in a standing light wave). By measuring the environment of the system, knowledge about the system state, and about the uncertain dynamical parameter, can be acquired. We find that these two sorts of knowledge acquisition (quantified by the posterior distribution for $\Omega$, and the conditional purity of the system, respectively) are quite distinct processes, which are not strongly correlated. Also, the quality and quantity of knowledge gain depend strongly on the type of monitoring scheme. We compare five different detection schemes (direct, adaptive, homodyne of the $x$ quadrature, homodyne of the $y$ quadrature, and heterodyne) using four different measures of the knowledge gain (Shannon information about $\Omega$, variance in $\Omega$, long-time system purity, and short-time system purity).Comment: 14 pages, 18 figure

Decoherence and thermalization dynamics of a quantum oscillator

We introduce the quantitative measures characterizing the rates of decoherence and thermalization of quantum systems. We study the time evolution of these measures in the case of a quantum harmonic oscillator whose relaxation is described in the framework of the standard master equation, for various initial states (coherent, `cat', squeezed and number). We establish the conditions under which the true decoherence measure can be approximated by the linear entropy $1-{Tr}\hat\rho^2$. We show that at low temperatures and for highly excited initial states the decoherence process consists of three distinct stages with quite different time scales. In particular, the `cat' states preserve 50% of the initial coherence for a long time interval which increases logarithmically with increase of the initial energy.Comment: 24 pages, LaTex, 8 ps figures, accepted for publication in J. Opt.

Stochastic simulations of the quantum Zeno effect

Published versio

Linear stochastic wave-equations for continuously measured quantum systems

While the linearity of the Schr\"odinger equation and the superposition principle are fundamental to quantum mechanics, so are the backaction of measurements and the resulting nonlinearity. It is remarkable, therefore, that the wave-equation of systems in continuous interaction with some reservoir, which may be a measuring device, can be cast into a linear form, even after the degrees of freedom of the reservoir have been eliminated. The superposition principle still holds for the stochastic wave-function of the observed system, and exact analytical solutions are possible in sufficiently simple cases. We discuss here the coupling to Markovian reservoirs appropriate for homodyne, heterodyne, and photon counting measurements. For these we present a derivation of the linear stochastic wave-equation from first principles and analyze its physical content.Comment: 34 pages, Revte

Targeting qubit states using open-loop control

We present an open-loop (bang-bang) scheme which drives an open two-level quantum system to any target state, while maintaining quantum coherence throughout the process. The control is illustrated by a realistic simulation for both adiabatic and thermal decoherence. In the thermal decoherence regime, the control achieved by the proposed scheme is qualitatively similar, at the ensemble level, to the control realized by the quantum feedback scheme of Wang, Wiseman, and Milburn [Phys. Rev. A 64, #063810 (2001)] for the spontaneous emission of a two-level atom. The performance of the open-loop scheme compares favorably against the quantum feedback scheme with respect to robustness, target fidelity and transition times.Comment: 27 pages, 7 figure

Stochastic simulations of conditional states of partially observed systems, quantum and classical

In a partially observed quantum or classical system the information that we cannot access results in our description of the system becoming mixed even if we have perfect initial knowledge. That is, if the system is quantum the conditional state will be given by a state matrix $\rho_r(t)$ and if classical the conditional state will be given by a probability distribution $P_r(x,t)$ where $r$ is the result of the measurement. Thus to determine the evolution of this conditional state under continuous-in-time monitoring requires an expensive numerical calculation. In this paper we demonstrating a numerical technique based on linear measurement theory that allows us to determine the conditional state using only pure states. That is, our technique reduces the problem size by a factor of $N$, the number of basis states for the system. Furthermore we show that our method can be applied to joint classical and quantum systems as arises in modeling realistic measurement.Comment: 16 pages, 11 figure