Indian Rock Should be Displayed for Everyone to Enjoy

Editorial published in March 13, 2010 on the Portsmouth Daily Journal on the Indian Head Rock.https://scholarworks.moreheadstate.edu/indian_head_rock/1144/thumbnail.jp

Indian Rock Like No Other - Could It be a Meterorite?

An editorial on the Indian Head Rock published in the Portsmouth Daily Times on March 27, 2010.https://scholarworks.moreheadstate.edu/indian_head_rock/1143/thumbnail.jp

Potential of Augmented Reality for Intelligent Transportation Systems

Rapid advances in wireless communication technologies coupled with ongoing massive development in vehicular networking standards and innovations in computing, sensing, and analytics have paved the way for intelligent transportation systems (ITS) to develop rapidly in the near future. ITS provides a complete solution for the efficient and intelligent management of real-time traffic, wherein sensory data is collected from within the vehicles (i.e., via their onboard units) as well as data exchanged between the vehicles, between the vehicles and their supporting roadside infrastructure/network, among the vehicles and vulnerable pedestrians, subsequently paving the way for the realization of the futuristic Internet of Vehicles. The traditional intent of an ITS system is to detect, monitor, control, and subsequently reduce traffic congestion based on a real-time analysis of the data pertinent to certain patterns of the road traffic, including traffic density at a geographical area of interest, precise velocity of vehicles, current and predicted travelling trajectories and times, etc. However, merely relying on an ITS framework is not an optimal solution. In case of dense traffic environments, where communication broadcasts from hundreds of thousands of vehicles could potentially choke the entire network (and so could lead to fatal accidents in the case of autonomous vehicles that depend on reliable communications for their operational safety), a fall back to the traditional decentralized vehicular ad hoc network (VANET) approach becomes necessary. It is therefore of critical importance to enhance the situational awareness of vehicular drivers so as to enable them to make quick but well-founded manual decisions in such safety-critical situations.Comment: In: Lee N. (eds) Encyclopedia of Computer Graphics and Games. Springer, Cham, 201

Phylogeny-aware identification and correction of taxonomically mislabeled sequences

Molecular sequences in public databases are mostly annotated by the submitting authors without further validation. This procedure can generate erroneous taxonomic sequence labels. Mislabeled sequences are hard to identify, and they can induce downstream errors because new sequences are typically annotated using existing ones. Furthermore, taxonomic mislabelings in reference sequence databases can bias metagenetic studies which rely on the taxonomy. Despite significant efforts to improve the quality of taxonomic annotations, the curation rate is low because of the labor-intensive manual curation process. Here, we present SATIVA, a phylogeny-aware method to automatically identify taxonomically mislabeled sequences ('mislabels') using statistical models of evolution. We use the Evolutionary Placement Algorithm (EPA) to detect and score sequences whose taxonomic annotation is not supported by the underlying phylogenetic signal, and automatically propose a corrected taxonomic classification for those. Using simulated data, we show that our method attains high accuracy for identification (96.9% sensitivity/91.7% precision) as well as correction (94.9% sensitivity/89.9% precision) of mislabels. Furthermore, an analysis of four widely used microbial 16S reference databases (Greengenes, LTP, RDP and SILVA) indicates that they currently contain between 0.2% and 2.5% mislabels. Finally, we use SATIVA to perform an in-depth evaluation of alternative taxonomies for Cyanobacteria

c-myc, not her-2/neu, can predict the prognosis of breast cancer patients: how novel, how accurate, and how significant?

The predictive and prognostic implication of oncogene amplification in breast cancer has received great attention in the past two decades. her-2/neu and c-myc are two oncogenes that are frequently amplified and overexpressed in breast carcinomas. Despite the extensive data on these oncogenes, their prognostic and predictive impact on breast cancer patients remains controversial. Schlotter and colleagues have recently suggested that c-myc, and not her-2/neu, could predict the recurrence and mortality of patients with node-negative breast carcinomas. Regardless of the promising results, caution should be exercised in the interpretation of data from studies assessing gene amplification without in situ analysis. We address the novelty, accuracy and clinical significance of the study by Schlotter and colleagues

Left main renal artery entrapment by diaphragmatic crura: spiral CT angiography

Entrapment of renal artery by the diaphragmatic crus is a rare cause of renal artery stenosis. Spiral computed tomography angiography provides a definitive diagnosis and shows the precise relationship of the artery to the diaphragmatic crus. The authors present a case of hypertension developing in a young 20-year-old female due to entrapment of the left renal artery by the diaphragmatic crus. This condition should be considered in young hypertensive patients with renal artery stenosis without cardiovascular risk factors

Perceived and Actual Breast Cancer Risk

Perceived risk can influence health behaviors. Studies using various populations and breast cancer risk bias assessment methods have identified both risk over- and underestimation. Among 1803 women in primary care settings, 47 percent were at average epidemiologic risk (Gail-calculated relative risk ±50 percent of age-adjusted population average) and 55 percent perceived themselves to be at average risk (compared to same-age others) but there were mismatches or ‘biases’: 31 percent underestimated personal risk; 26 percent overestimated. Multiple logistic regression revealed that smokers were more likely to overestimate risk. Overestimation decreased with more education. Mammography use did not independently predict perception bias but, among never-screened women aged over 40 years, those contemplating mammograms were most likely to overestimate risk; precontemplators were most likely to underestimate. Implications for research and intervention are discussed.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/66881/2/10.1177_135910539800300203.pd

High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research

A genomic analysis of the annual fish Nothobranchius furzeri, a vertebrate with the shortest known life span in captivity and which may provide a new model organism for aging research

Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Standards in Genomic Sciences 9 (2014): 1236-1250, doi:10.4056/sigs.4319681.This report summarizes the proceedings of the 14th workshop of the Genomic Standards Consortium (GSC) held at the University of Oxford in September 2012. The workshop’s primary goal was to work towards the launch of the Genomic Observatories (GOs) Network under the GSC. For the first time, it brought together potential GOs sites, GSC members, and a range of interested partner organizations. It thus represented the first meeting of the GOs Network (GOs1). Key outcomes include the formation of a core group of “champions” ready to take the GOs Network forward, as well as the formation of working groups. The workshop also served as the first meeting of a wide range of participants in the Ocean Sampling Day (OSD) initiative, a first GOs action. Three projects with complementary interests – COST Action ES1103, MG4U and Micro B3 – organized joint sessions at the workshop. A two-day GSC Hackathon followed the main three days of meetings.This work was supported in part by the US Na-tional Science Foundation through the research coordination network award RCN4GSC, DBI-0840989 and in part by a grant from the Gordon and Betty Moore Foundation, and travel grants of COST Action ES1103. The stakeholder session was supported by the European Union’s Seventh Framework Programme (FP7 /2007-2013) under grant agreement no 266055, and the Marine Ge-nomics for Users EU FP7 project (Coordination and support action, call FP7-KBBE-2010-4) grant no. 266055. We thank Eppendorf and Biomatters Ltd. for their sponsorship of the meeting