Regulatory Dynamics on Random Networks: Asymptotic Periodicity and Modularity

We study the dynamics of discrete-time regulatory networks on random digraphs. For this we define ensembles of deterministic orbits of random regulatory networks, and introduce some statistical indicators related to the long-term dynamics of the system. We prove that, in a random regulatory network, initial conditions converge almost surely to a periodic attractor. We study the subnetworks, which we call modules, where the periodic asymptotic oscillations are concentrated. We proof that those modules are dynamically equivalent to independent regulatory networks.Comment: 23 pages, 3 figure

X-ray rocking curve study of Si-implanted GaAs, Si, and Ge

Crystalline properties of Si-implanted GaAs, Si, and Ge have been studied by Bragg case double-crystal x-ray diffraction. Sharp qualitative and quantitative differences were found between the damage in GaAs on one hand and Si and Ge on the other. In Si and Ge the number of defects and the strain increase linearly with dose up to the amorphous threshold. In GaAs the increase in these quantities is neither linear nor monotonic with dose. At a moderate damage level the GaAs crystal undergoes a transition from elastic to plastic behavior. This transition is accompanied by the creation of extended defects, which are not detected in Si or Ge

Schwarzschild Atmospheric Processes: A Classical Path to the Quantum

We develop some classical descriptions for processes in the Schwarzschild string atmosphere. These processes suggest relationships between macroscopic and microscopic scales. The classical descriptions developed in this essay highlight the fundamental quantum nature of the Schwarzschild atmospheric processes.Comment: to appear in Gen. Rel. Gra

A core genetic module : the Mixed Feedback Loop

The so-called Mixed Feedback Loop (MFL) is a small two-gene network where protein A regulates the transcription of protein B and the two proteins form a heterodimer. It has been found to be statistically over-represented in statistical analyses of gene and protein interaction databases and to lie at the core of several computer-generated genetic networks. Here, we propose and mathematically study a model of the MFL and show that, by itself, it can serve both as a bistable switch and as a clock (an oscillator) depending on kinetic parameters. The MFL phase diagram as well as a detailed description of the nonlinear oscillation regime are presented and some biological examples are discussed. The results emphasize the role of protein interactions in the function of genetic modules and the usefulness of modelling RNA dynamics explicitly.Comment: To be published in Physical Review

Noise Effects on the Complex Patterns of Abnormal Heartbeats

Patients at high risk for sudden death often exhibit complex heart rhythms in which abnormal heartbeats are interspersed with normal heartbeats. We analyze such a complex rhythm in a single patient over a 12-hour period and show that the rhythm can be described by a theoretical model consisting of two interacting oscillators with stochastic elements. By varying the magnitude of the noise, we show that for an intermediate level of noise, the model gives best agreement with key statistical features of the dynamics.Comment: 4 pages, 4 figures, RevTe

Continual variations in the high energy X-ray flux from Sco X-1

Balloon X ray observations of intensity fluctuations in Sco X-

Dimension in a Radiative Stellar Atmosphere

Dimensional scales are examined in an extended 3+1 Vaidya atmosphere surrounding a Schwarzschild source. At one scale, the Vaidya null fluid vanishes and the spacetime contains only a single spherical 2-surface. Both of these behaviors can be addressed by including higher dimensions in the spacetime metric.Comment: to appear in Gen. Rel. Gra

A comparison of absolute, ratio and allometric scaling methods for normalizing strength in elite American football players

Division I football players exemplify the greatest range in body mass of any modern team sport. Body mass may differ by over 80 kg between the various positions. Absolute muscular strength is typically greater in larger individuals, but such data does not allow for accurate comparisons. Therefore, in order to compare the performance indices of individual groups allometric rather than ratio scaling has been suggested. The purpose of this study was to compare absolute strength, normalized ratio and allometrically scaled data among players of different size

Fractal Scales in a Schwarzschild Atmosphere

Recently, Glass and Krisch have extended the Vaidya radiating metric to include both a radiation fluid and a string fluid [1999 Class. Quantum Grav. vol 16, 1175]. Mass diffusion in the extended Schwarzschild atmosphere was studied. The continuous solutions of classical diffusive transport are believed to describe the envelope of underlying fractal behavior. In this work we examine the classical picture at scales on which fractal behavior might be evident.Comment: to appear in Class. Quantum Gra

Collective dynamics of two-mode stochastic oscillators

We study a system of two-mode stochastic oscillators coupled through their collective output. As a function of a relevant parameter four qualitatively distinct regimes of collective behavior are observed. In an extended region of the parameter space the periodicity of the collective output is enhanced by the considered coupling. This system can be used as a new model to describe synchronization-like phenomena in systems of units with two or more oscillation modes. The model can also explain how periodic dynamics can be generated by coupling largely stochastic units. Similar systems could be responsible for the emergence of rhythmic behavior in complex biological or sociological systems.Comment: 4 pages, RevTex, 5 figure