Pyridyl CO\u3csub\u3e2\u3c/sub\u3eFixation Enabled by a Secondary Hydrogen Bonding Coordination Sphere

Copyright © 2020 American Chemical Society. Reversible CO2 binders under ambient conditions are of significant interest for multiple applications in sensing and capture technologies. In this paper, a general systematic way to evaluate CO2 receptors with π-systems is put forward. A series of receptors (five pyridine-based and one triazine-based) are evaluated as CO2 binders in terms of number of hydrogen bonding sites, strength of hydrogen bond donors, and number of nucleophilic sites. The binding of CO2 to the receptors was probed by computational models, absorption spectroscopy, fluorescence spectroscopy, cyclic voltammetry, and 1H NMR studies. Multiple solvents with varying ionic strength additives are probed to analyze the effects on CO2-bound intermediates. The receptors were screened progressively down-selecting through the different analytical techniques arriving at a promising pyridine receptor, which shows evidence of CO2 binding with each of the analytical techniques. The diaminopyridine motif demonstrates reversible CO2 binding and has convenient substitution sites for derivatization to incorporate into functional sensor systems

Heteroacene-Based Amphiphile as a Molecular Scaffold for Bioimaging Probes

The challenges faced with current fluorescence imaging agents have motivated us to study two nanostructures based on a hydrophobic dye, 6H-pyrrolo[3,2-b:4,5-b’]bis [1,4]benzothiazine (TRPZ). TRPZ is a heteroacene with a rigid, pi-conjugated structure, multiple reactive sites, and unique spectroscopic properties. Here we coupled TRPZ to a tert-butyl carbamate (BOC) protected 2,2-bis(hydroxymethyl)propanoic acid (bisMPA) dendron via azide-alkyne Huisgen cycloaddition. Deprotection of the protected amine groups on the dendron afforded a cationic terminated amphiphile, TRPZ-bisMPA. TRPZ-bisMPA was nanoprecipitated into water to obtain nanoparticles (NPs) with a hydrodynamic radius that was \u3c150 nm. For comparison, TRPZ-PG was encapsulated in pluronic-F127 (Mw = 12 kD), a polymer surfactant to afford NPs almost twice as large as those formed by TRPZ-bisMPA. Size and stability studies confirm the suitability of the TRPZ-bisMPA NPs for biomedical applications. The photophysical properties of the TRPZ-bisMPA NPs show a quantum yield of 49%, a Stokes shift of 201 nm (0.72 eV) and a lifetime of 6.3 ns in water. Further evidence was provided by cell viability and cellular uptake studies confirming the low cytotoxicity of TRPZ-bisMPA NPs and their potential in bioimaging

Stability of the TiO₂ Nanuclusters Supported on Fe₂O₃-Hematite for Application in Electrocatalytic Water Splitting—An Insight from DFT Simulations

We present the analysis of the stability of the (TiO2)n nanoclusters, where n = 2–4, supported on the Fe3O3-hematite (100) surface. The analysis is focused on the size and geometry of the nanocluster, which defines the contact with the supporting hematite surface. The aim of the work is to explore the role of the interaction within the nanocluster as well as between the nanocluster and the surface in the structure of the composite system. We have used an in-house developed variant of the solids docking procedure to determine the most stable initial configurations of the nanoclusters with respect to the surface. Subsequently, we have carried out molecular dynamics simulations to enable finding a more stable configurations by the systems. The results show the three possible binding modes for the (TiO2)2 systems, but many more such modes for the larger clusters. Additionally, we have found that the partial dissociation of the nanocluster takes place upon the contact with the surface

Homology Modeling and Molecular Dynamics-Driven Search for Natural Inhibitors That Universally Target Receptor-Binding Domain of Spike Glycoprotein in SARS-CoV-2 Variants

The rapid spread of SARS-CoV-2 required immediate actions to control the transmission of the virus and minimize its impact on humanity. An extensive mutation rate of this viral genome contributes to the virus’ ability to quickly adapt to environmental changes, impacts transmissibility and antigenicity, and may facilitate immune escape. Therefore, it is of great interest for researchers working in vaccine development and drug design to consider the impact of mutations on virus-drug interactions. Here, we propose a multitarget drug discovery pipeline for identifying potential drug candidates which can efficiently inhibit the Receptor Binding Domain (RBD) of spike glycoproteins from different variants of SARS-CoV-2. Eight homology models of RBDs for selected variants were created and validated using reference crystal structures. We then investigated interactions between host receptor ACE2 and RBDs from nine variants of SARS-CoV-2. It led us to conclude that efficient multi-variant targeting drugs should be capable of blocking residues Q(R)493 and N487 in RBDs. Using methods of molecular docking, molecular mechanics, and molecular dynamics, we identified three lead compounds (hesperidin, narirutin, and neohesperidin) suitable for multitarget SARS-CoV-2 inhibition. These compounds are flavanone glycosides found in citrus fruits – an active ingredient of Traditional Chinese Medicines. The developed pipeline can be further used to (1) model mutants for which crystal structures are not yet available and (2) scan a more extensive library of compounds against other mutated viral proteins

(FA\u3csub\u3e0.83\u3c/sub\u3eMA\u3csub\u3e0.17\u3c/sub\u3e)\u3csub\u3e0.95\u3c/sub\u3eCs\u3csub\u3e0.05\u3c/sub\u3ePb(I\u3csub\u3e0.83\u3c/sub\u3eBr\u3csub\u3e0.17\u3c/sub\u3e)\u3csub\u3e3\u3c/sub\u3e Perovskite Films Prepared by Solvent Volatilization for High-Efficiency Solar Cells

Perovskite solar cells (PSCs) have attracted significant research efforts due to their remarkable performance. However, most perovskite films are prepared by the antisolvent method which is not suitable for practical applications. Herein, a (FA0.83MA0.17)0.95Cs0.05Pb(I0.83Br0.17)3 (CsFAMA) perovskite film fabrication technique is developed using solvent volatilization without any antisolvents. The films are formed through recrystallization via the intermediate phase CsMAFAPbI x Cl y Br z during annealing, leading to high-quality perovskite films. The perovskite growth mechanism is investigated in terms of controlling the amount of formamidinium iodide and methylammonium chloride in the precursor solutions. The oriental growth of the films via the intermediate phase is confirmed by the grazing-incidence wide-angle X-ray scattering measurements. The photovoltaic properties of the perovskite films are investigated. The PSCs based on the films fabricated using the method exhibit a high efficiency of 20.6%. The method developed in this work is based on solvent volatilization, which exhibits significant potential in high reproducibility, facile operation, and large-scale production

Investigation of cannabidiol’s potential targets in limbic seizures. <i>In-silico</i> approach

Even though the vast armamentarium of FDA-approved antiepileptic drugs is currently available, over one-third of patients do not respond to medication, which arises a need for alternative medicine. In clinical and preclinical studies, various investigations have shown the advantage of specific plant-based cannabidiol (CBD) products in treating certain groups of people with limbic epilepsy who have failed to respond to conventional therapies. This work aims to investigate possible mechanisms by which CBD possesses its anticonvulsant properties. Molecular targets for CBD’s treatment of limbic epilepsy, including hyperpolarization-activated cyclic nucleotide-gated channel 1 (HCN1), gamma-aminobutyric acid aminotransferase (GABA-AT), and gamma-aminobutyric acid type A receptor (GABAA), were used to evaluate its binding affinity. Interactions with the CB1 receptor were initially modeled as a benchmark, which further proved the efficiency of proposed here approach. Considering the successful benchmark, we further used the same concept for in silico investigation, targeting proteins of interest. As a result of molecular docking, molecular mechanics, and molecular dynamics simulations models of CBD-receptor complexes were proposed and evaluated. While CBD possessed decently high affinity and stability within the binding pockets of GABA-AT and some binding sites of GABAA, the most effective binding was observed in the CBD complex with HCN1 receptor. 100 ns molecular dynamics simulation revealed that CBD binds the open pore of HCN1 receptor, forming a similar pattern of interactions as potent Lamotrigine. Therefore, we can propose that HCN1 can serve as a most potent target for cannabinoid antiepileptic treatment. Communicated by Ramaswamy H. Sarma</p

Ultra Bright Near‐Infrared Sulfonate‐Indolizine Cyanine‐ and Squaraine‐Albumin Chaperones: Record Quantum Yields and Applications

The design of bright, high quantum yield (QY) materials in the near-infrared (NIR) spectral region in water remains a significant challenge. A series of cyanine and squaraine dyes varying water solubilizing groups and heterocycles are studied to probe the interactions of these groups with albumin in water. Unprecedented, \u27ultra bright\u27 emission in water is observed for a sulfonate indolizine squaraine dye (61.1% QY) and a sulfonate indolizine cyanine dye (46.7% QY) at NIR wavelengths of \u3e700 nm and \u3e800 nm, respectively. The dyes presented herein have a lower limit of detection than the most sensitive dyes known in the NIR region for albumin detection by at least an order of magnitude, which enables more sensitive diagnostic testing. Additionally, biotinylated human serum albumin complexed with the dyes reported herein was observed to function as an immunohistochemical reagent enabling high resolution imaging of cellular α-tubulin at low dye concentrations