The genotype files of multiple birch species in Eurasia

Tsuda_Betula_sampleInfo: This file includes a list of population code, name, country, longitude (E) and latitude (N) which are corresponding to "Tsuda_Betula1594_7loc_STRUCTURE.txt". Tsuda_Betula_TetDip_FSTAT: The genotype data for software FSTAT. To analyze diploid-tetraploid combined data keeping allele frequencies, tetraploid genotypes were treated as two diploid individuals in FSTAT. Tsuda_Betula1594_7loc_STRUCTURE: The input file of STRUCTURE analysis based on 7loci of 1594 individuals. Missing data is coded as -9. Betula_Betula877_18loc: The input file of STRUCTURE analysis based on 18loci of 877 diploid individuals. Missing data is coded as -9. Tsuda_Betula_4spABC: The input fie of DIYABC based on 18 loci in 4 species

The genotype files of multiple birch species in Eurasia

Tsuda_Betula_sampleInfo: This file includes a list of population code, name, country, longitude (E) and latitude (N) which are corresponding to "Tsuda_Betula1594_7loc_STRUCTURE.txt". Tsuda_Betula_TetDip_FSTAT: The genotype data for software FSTAT. To analyze diploid-tetraploid combined data keeping allele frequencies, tetraploid genotypes were treated as two diploid individuals in FSTAT. Tsuda_Betula1594_7loc_STRUCTURE: The input file of STRUCTURE analysis based on 7loci of 1594 individuals. Missing data is coded as -9. Betula_Betula877_18loc: The input file of STRUCTURE analysis based on 18loci of 877 diploid individuals. Missing data is coded as -9. Tsuda_Betula_4spABC: The input fie of DIYABC based on 18 loci in 4 species

DATA : Abies data

<p>BlastX and  functional annotation (sheet 1), SNPs design (sheet 2) and SNPs Genotyping* (sheet 3).</p> <p>*<em>Abies alba</em> and<em> A. cephalonica</em> populations (10 altitudinal gradients accross Europe from French Pyrennées to Greece) / 273 SNPs</p

Name, code, geographic location, soil and climate types of the sampled populations.

<p>Name, code, geographic location, soil and climate types of the sampled populations.</p

Code, repeat unit, size, fragment start and end and position relative to the start of the fragment of the six <i>A</i>. <i>unedo</i> cpSSR primers used in this study.

<p>Code, repeat unit, size, fragment start and end and position relative to the start of the fragment of the six <i>A</i>. <i>unedo</i> cpSSR primers used in this study.</p

Main within-population genetic parameters for the 15 populations analysed in this study.

<p>N = population sample size; N_h = number of haplotypes; A_e = effective number of haplotypes; A_R = haplotypic richness; H_e = unbiased haplotype diversity with standard errors in brackets; D²_sh is the average genetic distances among individuals and D²_sh^ng is the average genetic distances among individuals with no gaps; Ph = number of private haplotypes.</p

Population diversity partition according to Petit et al. [38]

<p>(A) Contribution to the total diversity (CT%) of each population subdivided into own-diversity (white) and divergence (grey) components. (B) Contribution to the total haplotypic richness (CTR%) of each population subdivided into own-diversity (grey) and divergence (white) components.</p

Haplotype network.

<p>The haplotype network is a minimum spanning tree based on the differences in number of repeats. The circles size is proportional to rescaled haplotype frequencies (see M&M for details). Colours indicate in which populations is present each haplotype. In case one haplotype is present in several populations, the circle is divided in circle sectors that are proportional to the number of plants in each population having that haplotype.</p

FASTAQ file for Echinogammarus veneris

FASTAQ file for Echinogammarus veneri

Echinogammarus veneris, transcriptome shotgun assembly

Echinogammarus veneris, transcriptome shotgun assembl