STRUCTURE data Class2Rep1

STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA. Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields. Columns in each dataset are: CloneID, Marker1, Marker2, Marker3, Marker4, Marker5. All markers are unlinked. To findthe markers on the map, use the ID codes in the file called "MarkerIDcodes.txt

STRUCTURE data Class1Rep3

STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA. Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields. Columns in each dataset are: CloneID, Marker1, Marker2, Marker3, Marker4, Marker5. All markers are unlinked. To findthe markers on the map, use the ID codes in the file called "MarkerIDcodes.txt

STRUCTURE data Class3Rep1

STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA. Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields. Columns in each dataset are: CloneID, Marker1, Marker2, Marker3, Marker4, Marker5. All markers are unlinked. To findthe markers on the map, use the ID codes in the file called "MarkerIDcodes.txt

FDIST_Summary195markers_msat&AFLP&codom

Contains the output of Fdist2 for all markers-- microsatellites, AFLPs and sequence-tagged codoms. Columns are: markerName, outlier?(0 = non-outlier, 1= marginal outlier, 2 = significant outlier),Fst,(1-p) at Round1,(1-p) at Round2, (1-p) at Round3, heterozygosit

JoinmapInputGenotypeFile

JoinMapGenotypeInputFile: Contains the microsatellite genotypes for each of the 198 F2 in the mapping cross. The genotypes are coded according to the JoinMap segregation types. Rows at the top are wrapped around in this tab-delimited text file, but will load into Excel properly. These 5 rows are: Markername, segregationType, Phase, Markertype, marker# The left-most column contains the F2 ID numbers. These data were classified as "CP" for Joinmap, since they came from an outcrossed population

STRUCTURE data Class1Rep4

STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA. Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields. Columns in each dataset are: CloneID, Marker1, Marker2, Marker3, Marker4, Marker5. All markers are unlinked. To findthe markers on the map, use the ID codes in the file called "MarkerIDcodes.txt

TraitsFileF2

Phenotypic values for each of the 198 F2 used in the QTL map. Values are BLUPs from a mixed model ANOVA. File is tab delimited

STRUCTURE data Class3Rep4

STRUCTURE input file for the 196 pea aphids from the wild populations from Tompkins County, New York, USA. Clones beginning with ABR and AFR were collected from alfalfa fields.Clones beginning with CBR and CFR were collected from clover fields. Columns in each dataset are: CloneID, Marker1, Marker2, Marker3, Marker4, Marker5. All markers are unlinked. To findthe markers on the map, use the ID codes in the file called "MarkerIDcodes.txt

Additional file 1: of Bioinformatically predicted deleterious mutations reveal complementation in the interior spruce hybrid complex

Supplementary Material. Supplementary Figure S1-S6 (referenced in text). (PDF 9957 kb