Conformations of biopolymers in the gas phase: a new mass spectrometric method

A method is developed for measuring collision cross sections of gas-phase biomolecules using a slightly modified commercial triple quadrupole instrument. The modifications allow accurate stopping potentials to be measured for ions exiting the collision region of the instrument. A simple model allows these curves to be converted to cross sections. In order to account for certain poorly defined experimental parameters (exact ion energy, absolute pressure in the collision cell, etc.) variable parameters are included in the model. These parameters are determined on a case by case basis by normalizing the results to the well known cross section of singly charged bradykinin, Two relatively large systems were studied (cytochrome c and myoglobin) so comparisons could be made to literature values. A number of new peptide systems were then studied in the 9 -14 residue range. These included singly and doubly charged ions of luteinizing hormone releasing hormone (LHRH) substance P, and bombesin in addition to bradykinin. The experimental cross sections were in very good agreement with predictions from extensive molecular dynamics modeling. One interesting result was the experimental observation that the cross section of the doubly charged ions of LHRH, substance P, and bombesin were all smaller than those of the corresponding singly charged ions. Molecular dynamics did not reproduce this result, predicting doubly charged cross sections of the same magnitude or slightly larger than for the singly charged species. The experimental results appear to be correct, however. Possible shortcomings in the modeling procedure for multiply charged ions were suggested that might account for the discrepancy

The effects of acceleration stress on human workload and manual control

The effects of +Gz stress on operator task performance and workload were assessed. Subjects were presented a two dimensional maze and were required to solve it as rapidly as possible (by moving a light dot through it via a trim switch on a control stick) while under G-stress at levels from +1 Gz to +6 Gz. The G-stress was provided by a human centrifuge. The effects of this stress were assessed by two techniques; (1) objective performance measures on the primary maze-solving task, and (2) subjective workload measures obtained using the subjective workload assessment technique (SWAT). It was found that while neither moderate (+3 Gz) nor high (+5 Gz and +6 Gz) levels of G-stress affected maze solving performance, the high G levels did increase significantly the subjective workload of the maze task

Flow and acoustic characteristics of subsonic and supersonic jets from convergent nozzle

Acoustic and flow characteristics of subsonic and supersonic jets from convergent nozzle

Progress in thin film GaAs solar cells

Solar cells using polycrystalline films of gallium arsenid

Variability in the reported management of pulmonary metastases in osteosarcoma.

Nearly 20% of patients with newly diagnosed osteosarcoma have detectable metastases at diagnosis; the majority of which occur in the lungs. There are no established recommendations for the timing and modality of metastasectomy. Members of the Connective Tissue Oncology Society (CTOS) were emailed an anonymous 10-min survey assessing their management practices for pulmonary findings at the time of an osteosarcoma diagnosis. The questionnaire presented three scenarios and discussed the choice to perform surgery, the timing of resection, and the choice of surgical procedure. Analyses were stratified by medical profession. One hundred and eighty-three physicians responded to our questionnaire. Respondents were comprised of orthopedic surgeons (37%), medical oncologists (31%), pediatric oncologists (22%), and other medical subspecialties (10%). There was variability among the respondents in the management of the pulmonary nodules. The majority of physicians chose to resect the pulmonary nodules following neoadjuvant chemotherapy (46-63%). Thoracotomy was the preferred technique for surgical resection. When only unilateral findings were present, the majority of physicians did not explore the contralateral lung. The majority of respondents did not recommend resection if the pulmonary nodule disappeared following chemotherapy. The survey demonstrated heterogeneity in the management of pulmonary metastases in osteosarcoma. Prospective trials need to evaluate whether these differences in management have implications for outcomes for patients with metastatic osteosarcoma

Damping of bulk excitations over an elongated BEC - the role of radial modes

We report the measurement of Beliaev damping of bulk excitations in cigar shaped Bose Einstein condensates of atomic vapor. By using post selection, excitation line shapes of the total population are compared with those of the undamped excitations. We find that the damping depends on the initial excitation energy of the decaying quasi particle, as well as on the excitation momentum. We model the condensate as an infinite cylinder and calculate the damping rates of the different radial modes. The derived damping rates are in good agreement with the experimentally measured ones. The damping rates strongly depend on the destructive interference between pathways for damping, due to the quantum many-body nature of both excitation and damping products.Comment: 5 pages, 4 figure

Robustness of Planar Fourier Capture Arrays to Colour Changes and Lost Pixels

Planar Fourier capture arrays (PFCAs) are optical sensors built entirely in standard microchip manufacturing flows. PFCAs are composed of ensembles of angle sensitive pixels (ASPs) that each report a single coefficient of the Fourier transform of the far-away scene. Here we characterize the performance of PFCAs under the following three non-optimal conditions. First, we show that PFCAs can operate while sensing light of a wavelength other than the design point. Second, if only a randomly-selected subset of 10% of the ASPs are functional, we can nonetheless reconstruct the entire far-away scene using compressed sensing. Third, if the wavelength of the imaged light is unknown, it can be inferred by demanding self-consistency of the outputs.Comment: 15 pages including cover page, 12 figures, associated with the 9th International Conference on Position Sensitive Detector

A quasi-monomode guided atom-laser from an all-optical Bose-Einstein condensate

We report the achievement of an optically guided and quasi-monomode atom laser, in all spin projection states ($m_F =$ -1, 0 and $+1$) of F=1 in Rubidium 87. The atom laser source is a Bose-Einstein condensate (BEC) in a crossed dipole trap, purified to any one spin projection state by a spin-distillation process applied during the evaporation to BEC. The atom laser is outcoupled by an inhomogenous magnetic field, applied along the waveguide axis. The mean excitation number in the transverse modes is $= 0.65 \pm 0.05$ for $m_F = 0$ and $= 0.8 \pm 0.3$ for the low field seeker $m_F = -1$

Estimation of Parameters in DNA Mixture Analysis

In Cowell et al. (2007), a Bayesian network for analysis of mixed traces of DNA was presented using gamma distributions for modelling peak sizes in the electropherogram. It was demonstrated that the analysis was sensitive to the choice of a variance factor and hence this should be adapted to any new trace analysed. In the present paper we discuss how the variance parameter can be estimated by maximum likelihood to achieve this. The unknown proportions of DNA from each contributor can similarly be estimated by maximum likelihood jointly with the variance parameter. Furthermore we discuss how to incorporate prior knowledge about the parameters in a Bayesian analysis. The proposed estimation methods are illustrated through a few examples of applications for calculating evidential value in casework and for mixture deconvolution

Automated operation of a home made torque magnetometer using LabVIEW

In order to simplify and optimize the operation of our home made torque magnetometer we created a new software system. The architecture is based on parallel, independently running instrument handlers communicating with a main control program. All programs are designed as command driven state machines which greatly simplifies their maintenance and expansion. Moreover, as the main program may receive commands not only from the user interface, but also from other parallel running programs, an easy way of automation is achieved. A program working through a text file containing a sequence of commands and sending them to the main program suffices to automatically have the system conduct a complex set of measurements. In this paper we describe the system's architecture and its implementation in LabVIEW.Comment: 6 pages, 7 figures, submitted to Rev. Sci. Inst