Dynamical fluctuations in biochemical reactions and cycles

We develop theory for the dynamics and fluctuations in some cyclic and linear biochemical reactions. We use the approach of maximum caliber, which computes the ensemble of paths taken by the system, given a few experimental observables. This approach may be useful for interpreting single-molecule or few-particle experiments on molecular motors, enzyme reactions, ion-channels, and phosphorylation-driven biological clocks. We consider cycles where all biochemical states are observable. Our method shows how: (1) the noise in cycles increases with cycle size and decreases with the driving force that spins the cycle and (2) provides a recipe for estimating small-number features, such as probability of backward spin in small cycles, from experimental data. The back-spin probability diminishes exponentially with the deviation from equilibrium. We believe this method may also be useful for other few-particle nonequilibrium biochemical reaction systems

Anomalous Lorentz and CPT violation from a local Chern-Simons-like term in the effective gauge-field action

We consider four-dimensional chiral gauge theories defined over a spacetime manifold with topology $\mathbb{R}^3 \times S^1$ and periodic boundary conditions over the compact dimension. The effective gauge-field action is calculated for Abelian $U(1)$ gauge fields $A_{\mu}(x)$ which depend on all four spacetime coordinates (including the coordinate $x^{4}\in S^1$ of the compact dimension) and have vanishing components $A_{4}(x)$ (implying trivial holonomies in the 4-direction). Our calculation shows that the effective gauge-field action contains a local Chern-Simons-like term which violates Lorentz and CPT invariance. This result is established perturbatively with a generalized Pauli-Villars regularization and nonperturbatively with a lattice regularization based on Ginsparg-Wilson fermions.Comment: 48 pages, v7: published versio

Effect of a weak longitudinal modulation in refractive index on transverse localization of light in 1D disordered waveguide lattices

We report the enhancement of the effect of transverse localization of light (TL) in presence of a weak longitudinal modulation of refractive index in disordered waveguide lattices. In our chosen lattices, tunneling inhibition along length favors to achieve the diffraction-free propagation along with the simultaneous presence of transverse disorder. Results will be useful to tune the threshold value of disorder to achieve localized light.Comment: 4 pages. arXiv admin note: text overlap with arXiv:1204.614

Correlation effects on magnetic frustration in the triangular-lattice Hubbard model

Evolution of the magnetic response function in the triangular-lattice Hubbard model is studied with interaction strength within a systematic inverse-degeneracy expansion scheme which incorporates self-energy and vertex corrections and explicitly preserves the spin-rotation symmetry. It is shown that at half filling the response function goes through a nearly dispersionless regime around K for intermediate coupling strength, before undergoing an inversion at strong coupling, resulting in maximum response at the K point, consistent with the expected 120^o AF instability. Effects of finite hole/electron doping on the magnetic response function are also examined.Comment: 20 pages, 9 figure