Phylogeny of the order Tintinnida (Ciliophora, Spirotrichea) inferred from small- and large-subunit rRNA genes

Concatenated sequences of small- and large-subunit rRNA genes were used to infer the phylogeny of 29 species in six genera of Tintinnida. We confirmed previous results on the positions of major clusters and the grouping of various genera, including Stenosemella, the paraphyletic Tintinnopsis, the newly investigated Helicostomella, and some species of the polyphyletic Favella. Tintinnidium and Eutintinnus were found to be monophyletic. This study contributes to tintinnid phylogenetic reconstruction by increasing both the number of species and the range of genetic markers analyzed.Fil: Santoferrara, Luciana Fernanda. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina. University of Connecticut; Estados UnidosFil: McManus, George B.. University of Connecticut; Estados UnidosFil: Alder, Viviana Andrea. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución. Cátedra de Ecología General; Argentina. Ministerio de Relaciones Exteriores, Comercio Interno y Culto. Dirección Nacional del Antártico. Instituto Antártico Argentino; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentin

Trophic Transfer of Fatty Acids, Sterols, and a Triterpenoid Alcohol Between Bacteria, a Ciliate, and the Copepod Acartia Tonsa

The incorporation of lipids into the copepod Acartia tonsa and its eggs was measured when it was fed either a bacterivorous ciliate (Pleuronema sp.) or a diatom (Thalassiosira weissflogii). Egg production was 10-fold higher on the diatom diet, whereas hatch success of eggs was the same for algal and ciliate diets. Adult copepods fed diatoms contained more total fatty acid and sterols than copepods fed the ciliate diet, and individual lipids reflected the dietary source. Eggs from diatom-fed copepods had fewer fatty acids but more sterols than eggs from copepods on a ciliate diet. Ciliate-fed copepods and their eggs contained significant amounts of odd chain-length and branched fatty acids diagnostic of bacteria. These fatty acids, in particular the iso C15 and C17, were also elevated in ciliates feeding on bacteria in culture, suggesting the direct transfer of bacterial fatty acids from ciliates to copepods and their eggs. We also observed the assimilation of tetrahymanol, a triterpenoid alcohol specific to ciliates, into adults and eggs when copepods were fed a ciliate diet. Tetrahymanol accounted for 6.6±1.9% of total neutral lipids in adults and 35.4 ± 6.5% in eggs. These results suggest that bacterivorous ciliates may not provide copepods with adequate nutritional requirements for long-term survival, but that lipids unique to bacteria and ciliates can be assimilated by and may provide useful tracers of consumption by copepods

Development and Lipid Composition of the Harpacticoid Copepod Nitocra Spinipes Reared on Different Diets

We reared the harpacticoid copepod Nitocra spinipes on diets of bacteria, a diatom, or a macroalga, evaluating survivorship and growth in short-term (≤ 1 generation) experiments. Lipid content of the copepods and their diets was measured and used as an index of nutrition. Although growth, survivorship and lipid content of N. spinipes were significantly greater when fed the diatom, which had the highest lipid content of the 3 diets, the copepod was able to develop from egg to adult when fed a lipid- poor bacterial diet. Furthermore, this species was able to go through developmental molts without the addition of food (6 individuals from a starved cohort of 25 made it to at least copepodite stage I), suggesting the uptake of dissolved organic matter for growth. This widespread estuarine benthic copepod apparently has the ability to survive on diverse and nutritionally poor diets, a quality that is useful in a variable, detritus-dominated environment

Current velocities from ADCP from an R/V Lowell Weicker cruise in Fisher's Island Sound (NY/CT) in May 2012

Dataset: ADCP_WeickerThis dataset contains northward and eastward components of current velocity measured by Acoustic Doppler Current Profiler (ADCP). Velocity components are given at every 0.5 meter depth. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/3713NSF Division of Ocean Sciences (NSF OCE) OCE-1129734, NSF Division of Ocean Sciences (NSF OCE) OCE-113003

CTD data from 5 stations collected on an R/V Lowell Weicker cruise in Fisher's Island Sound (NY/CT) in 2012

Dataset: CTD_WeickerTemperature, salinity, fluorescence, and sigma-t density measured by CTD are reported for 5 stations in Fisher's Island Sound. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/3714NSF Division of Ocean Sciences (NSF OCE) OCE-1129734, NSF Division of Ocean Sciences (NSF OCE) OCE-113003

Incubation and Grazing Effects on Spirotrich Ciliate Diversity Inferred from Molecular Analyses of Microcosm Experiments

We used an experimental approach of analyzing marine microcosms to evaluate the impact of both predation (top-down) and food resources (bottom-up) on spirotrich ciliate communities. To assess the diversity, we used two molecular methods-denaturing gradient gel electrophoresis (DGGE) and high-throughput sequencing (HTS). We carried out two types of experiments to measure top-down (adult copepods as predators) and bottom-up effects (phytoplankton as food resources) on the spirotrich ciliates. We observed both strong incubation effects (untreated controls departed from initial assessment of diversity) and high variability across replicates within treatments, particularly for the bottom-up experiments. This suggests a rapid community turn-over during incubation and differential susceptibility to the effects of experimental manipulation. Despite the variability, our analyses reveal some broad patterns such as (1) increasing adult copepod predator abundance had a greater impact on spirotrich ciliates than on other microbial eukaryotes; (2) there was no evidence for strong food selection by the dominant spirotrich ciliates

Distribution of Abundant and Active Planktonic Ciliates in Coastal and Slope Waters Off New England

Despite their important role of linking microbial and classic marine food webs, data on biogeographical patterns of microbial eukaryotic grazers are limited, and even fewer studies have used molecular tools to assess active (i.e., those expressing genes) community members. Marine ciliate diversity is believed to be greatest at the chlorophyll maximum, where there is an abundance of autotrophic prey, and is often assumed to decline with depth. Here, we assess the abundant (DNA) and active (RNA) marine ciliate communities throughout the water column at two stations off the New England coast (Northwest Atlantic)—a coastal station 43 km from shore (40 m depth) and a slope station 135 km off shore (1,000 m). We analyze ciliate communities using a DNA fingerprinting technique, Denaturing Gradient Gel Electrophoresis (DGGE), which captures patterns of abundant community members. We compare estimates of ciliate communities from SSU-rDNA (abundant) and SSU-rRNA (active) and find complex patterns throughout the water column, including many active lineages below the photic zone. Our analyses reveal (1) a number of widely-distributed taxa that are both abundant and active; (2) considerable heterogeneity in patterns of presence/absence of taxa in offshore samples taken 50 m apart throughout the water column; and (3) three distinct ciliate assemblages based on position from shore and depth. Analysis of active (RNA) taxa uncovers biodiversity hidden to traditional DNA-based approaches (e.g., clone library, rDNA amplicon studies)