A Cereal Chemist's Quick Guide to Genetics, Plant Breeding and BioIT

This book is intended as a guide for cereal chemists in quality testing laboratories and grain product development companies, to help them in their understanding of fundamental genetics, functional genomics and other concepts of relevance during their interactions with crop breeding programs. Consequently the emphasis is on quick definitions of terms and concepts, assuming that the expertise of the reader is predominantly in another field.Established and supported under the Australian Government’s Cooperative Research Centre Progra

The Identification of Extreme Asymptotic Giant Branch Stars and Red Supergiants in M33 by 24 {\mu}m Variability

We present the first detection of 24 {\mu}m variability in 24 sources in the Local Group galaxy M33. These results are based on 4 epochs of MIPS observations, which are irregularly spaced over ~750 days. We find that these sources are constrained exclusively to the Holmberg radius of the galaxy, which increases their chances of being members of M33. We have constructed spectral energy distributions (SEDs) ranging from the optical to the sub-mm to investigate the nature of these objects. We find that 23 of our objects are most likely heavily self-obscured, evolved stars; while the remaining source is the Giant HII region, NGC 604. We believe that the observed variability is the intrinsic variability of the central star reprocessed through their circumstellar dust shells. Radiative transfer modeling was carried out to determine their likely chemical composition, luminosity, and dust production rate (DPR). As a sample, our modeling has determined an average luminosity of (3.8 $\pm$ 0.9) x 10$^4$ L$_\odot$ and a total DPR of (2.3 $\pm$ 0.1) x 10$^{-5}$ M$_\odot$ yr$^{-1}$. Most of the sources, given the high DPRs and short wavelength obscuration, are likely "extreme" AGB (XAGB) stars. Five of the sources are found to have luminosities above the classical AGB limit (M$_{\rm bol}$ 54,000 L$_\odot$), which classifies them as probably red supergiants (RSGs). Almost all of the sources are classified as oxygen rich. As also seen in the LMC, a significant fraction of the dust in M33 is produced by a handful of XAGB and RSG stars.Comment: 36 pages, 14 figures, 4 tables, Accepted for publication in A

Community-onset Staphylococcus aureus infections presenting to general practices in South-eastern Australia

Community-acquired Staphylococcus aureus infections are a public health concern, yet little is known about infections that do not present to hospital. We identified community-onset S. aureus infections via specimens submitted to a community-based pathology service. Referring doctors confirmed eligibility and described infection site, severity and treatment. Isolates were characterized on antibiotic resistance, PFGE, MLST/SCCmec, and Panton–Valentine leukocidin (PVL), representing 106 community-onset infections; 34 non-multiresistant methicillin-resistant S. aureus (nmMRSA) (resistant to <3 non-β-lactam antibiotics), 15 multiply antibiotic-resistant MRSA (mMRSA) and 57 methicillin-sensitive S. aureus (MSSA). Most (93%) were skin and soft tissue infections. PVL genes were carried by 42% of nmMRSA isolates [95% confidence interval (CI) 26–61] and 15% of MSSA (95% CI 8–28). PVL was associated with infections of the trunk, head or neck (56•4% vs. 24•3%, P = 0•005) in younger patients (23 vs. 52 years, P < 0•001), and with boils or abscesses (OR 8•67, 95% CI 2•9–26•2), suggesting underlying differences in exposure and/or pathogenesis

\u27Never cry for food\u27: food security, poverty, and recurring themes in news media regarding rabbit farming in East Africa

Rabbit farming is a form of low input agriculture that has potential to address food security and poverty in East Africa and beyond. For low input agriculture, farmers utilize local and affordable farm resources making it accessible across income levels. Understanding barriers and facilitators to rabbit farming could increase effectiveness of this form of low input agriculture in communities struggling with low food security and poverty, particularly for indigenous, smallholder farms. News media is an available source of data about community perceptions and practices on issues such as rabbit farming, food security, and poverty. For this qualitative study, researchers applied a priori and open coding text analysis to examine recurring themes in news media representations regarding perceptions of rabbit farming in East Africa. Results reveal that community members view rabbit farming as a community strategy that promotes better nutrition and food security while reducing poverty. Important themes included how gender and other cultural norms shaped efforts, and the role of sustainability and climate change on farming practices. Further, the easy cultivation of rabbits, funding, and protective policy and support of indigenous smallholder farms were perceived as facilitators for rabbit farming. Finally, investment in infrastructure for market, production, and knowledge-transfer of best production and business practices were considered critical to success for rabbit farmers throughout East Africa

Retired A Stars and Their Companions VI. A Pair of Interacting Exoplanet Pairs Around the Subgiants 24 Sextanis and HD200964

We report radial velocity measurements of the G-type subgiants 24 Sextanis (=HD90043) and HD200964. Both are massive, evolved stars that exhibit periodic variations due to the presence of a pair of Jovian planets. Photometric monitoring with the T12 0.80m APT at Fairborn Observatory demonstrates both stars to be constant in brightness to <= 0.002 mag, thus strengthening the planetary interpretation of the radial velocity variations. 24 Sex b,c have orbital periods of 453.8 days and 883~days, corresponding to semimajor axes 1.333 AU and 2.08 AU, and minimum masses (Msini) 1.99 Mjup and 0.86 Mjup, assuming a stellar mass 1.54 Msun. HD200964 b,c have orbital periods of 613.8 days and 825 days, corresponding to semimajor axes 1.601 AU and 1.95 AU, and minimum masses 1.85 Mjup and 0.90 Mjup, assuming M* = 1.44 Msun. We also carry out dynamical simulations to properly account for gravitational interactions between the planets. Most, if not all, of the dynamically stable solutions include crossing orbits, suggesting that each system is locked in a mean motion resonance that prevents close encounters and provides long-term stability. The planets in the 24 Sex system likely have a period ratio near 2:1, while the HD200964 system is even more tightly packed with a period ratio close to 4:3. However, we caution that further radial velocity observations and more detailed dynamical modelling will be required to provide definitive and unique orbital solutions for both cases, and to determine whether the two systems are truly resonant.Comment: AJ accepte

A New Planet Around an M Dwarf: Revealing a Correlation Between Exoplanets and Stellar Mass

We report precise Doppler measurements of GJ317 (M3.5V) that reveal the presence of a planet with a minimum mass Msini = 1.2 Mjup in an eccentric, 692.9 day orbit. GJ317 is only the third M dwarf with a Doppler-detected Jovian planet. The residuals to a single-Keplerian fit show evidence of a possible second orbital companion. The inclusion of an additional Jupiter-mass planet (P = 2700 days, Msini = 0.83 Mjup) improves the quality of fit significantly, reducing the rms from 12.5 m/s to 6.32 m/s. A false-alarm test yields a 1.1% probability that the curvature in the residuals of the single-planet fit is due to random fluctuations, lending additional credibility to the two-planet model. However, our data only marginally constrain a two-planet fit and further monitoring is necessary to fully characterize the properties of the second planet. To study the effect of stellar mass on Jovian planet occurrence we combine our samples of M stars, Solar-mass dwarfs and intermediate-mass subgiants. We find a positive correlation between stellar mass and the occurrence rate of Jovian planets within 2.5 AU; the former A-type stars in our sample are nearly 5 times more likely than the M dwarfs to harbor a giant planet. Our analysis shows that the correlation between Jovian planet occurrence and stellar mass remains even after accounting for the effects of stellar metallicity.Comment: ApJ accepted, 27 pages, 6 figures, 3 table

Non-detection of previously reported transits of HD 97658b with MOST photometry

The radial velocity-discovered exoplanet HD 97658b was recently announced to transit, with a derived planetary radius of 2.93 \pm 0.28 R_{Earth}. As a transiting super-Earth orbiting a bright star, this planet would make an attractive candidate for additional observations, including studies of its atmospheric properties. We present and analyze follow-up photometric observations of the HD 97658 system acquired with the MOST space telescope. Our results show no transit with the depth and ephemeris reported in the announcement paper. For the same ephemeris, we rule out transits for a planet with radius larger than 2.09 R_{Earth}, corresponding to the reported 3\sigma lower limit. We also report new radial velocity measurements which continue to support the existence of an exoplanet with a period of 9.5 days, and obtain improved orbital parameters.Comment: 16 pages, 4 figures; 1 Table; accepted for publication in ApJL, includes changes made in response to the referee repor