Graph Self-Contrast Representation Learning

Graph contrastive learning (GCL) has recently emerged as a promising approach for graph representation learning. Some existing methods adopt the 1-vs-K scheme to construct one positive and K negative samples for each graph, but it is difficult to set K. For those methods that do not use negative samples, it is often necessary to add additional strategies to avoid model collapse, which could only alleviate the problem to some extent. All these drawbacks will undoubtedly have an adverse impact on the generalizability and efficiency of the model. In this paper, to address these issues, we propose a novel graph self-contrast framework GraphSC, which only uses one positive and one negative sample, and chooses triplet loss as the objective. Specifically, self-contrast has two implications. First, GraphSC generates both positive and negative views of a graph sample from the graph itself via graph augmentation functions of various intensities, and use them for self-contrast. Second, GraphSC uses Hilbert-Schmidt Independence Criterion (HSIC) to factorize the representations into multiple factors and proposes a masked self-contrast mechanism to better separate positive and negative samples. Further, Since the triplet loss only optimizes the relative distance between the anchor and its positive/negative samples, it is difficult to ensure the absolute distance between the anchor and positive sample. Therefore, we explicitly reduced the absolute distance between the anchor and positive sample to accelerate convergence. Finally, we conduct extensive experiments to evaluate the performance of GraphSC against 19 other state-of-the-art methods in both unsupervised and transfer learning settings.Comment: ICDM 2023(Regular

Micropore evolution in additively manufactured aluminum alloys under heat treatment and inter-layer rolling

The application of wire + arc additively manufactured (WAAM) aluminum alloys has been restricted by the porosity defect, which is generally detrimental to the mechanical properties. Suppressing of micropores in the WAAM components has attracted considerable attention in recent years. Inter-layer rolling was introduced to eliminate micropores during the WAAM deposition of the Al–Cu6.3 and Al–Mg4.5 alloys. The distribution characteristics and individual morphology of micropores were revealed by the X-ray diffraction tomography. Key findings demonstrated that the number, volume, size, and roundness of micropores in rolled alloys decreased similarly with increasing loads, eventually achieving a density of over 99.9%. After the heat treatment, the homogeneous distribution of fine (around 5.3 μm) and spherical (0.70–0.74) micropores was realized in the 45 kN rolled alloys. All the evaluated indicators of micropores in the 45 kN rolled + heat treated alloys were superior to the post-deposition heat treated state. The evolution mechanisms include the reprecipitation of hydrogen pores, formation of vacant voids, and re-opening of unclosed pores. The hybrid technique of WAAM + rolling + heat treatment has great potential in promoting mechanical properties of WAAM alloys. The results will provide a theoretical guidance for the design of high-performance WAAM aluminum alloy components

Microstructure, defects, and mechanical properties of wire + arc additively manufactured AlCu4.3-Mg1.5 alloy

The wire with a composition of AlCu4.3%Mg1.5% was customized and used to deposit the WAAM alloy with the power source of cold metal transfer. The microstructure, defect, and mechanical properties of the as-deposited and heat-treated WAAM alloys were studied. Key findings demonstrated that the microstructure of the as-deposited alloy was characterized by a hierarchical distribution of dendrites, equiaxed grains, and a slight number of columnar grains. The volume fraction of the network-like scattered coarse particles of second phases θ + S reduced by 95% after the T6 heat treatment. With an average microhardness of 161.4 HV, the mean yield strength and ultimate tensile strength of the WAAM alloy increased by 116% and 66% achieving 399 MPa and 485 MPa in the horizontal direction after heat treatment. The precipitation of a high density of needle-shaped metastable S′ precipitates was responsible for the significantly enhanced mechanical properties. However, this WAAM alloy has exhibited an anisotropic tensile property. A considerable number of sharp-angled defects like linear and chain-like micropores, which generally depress the mechanical properties, were formed in the WAAM alloys

Functional variant of the carboxypeptidase M (CPM) gene may affect silica-related pneumoconiosis susceptibility by its expression: a multistage case-control study.

ObjectivesIn a genome-wide association study, we discovered chromosome 12q15 (defined as rs73329476) as a silica-related pneumoconiosis susceptibility region. However, the causal variants in this region have not yet been reported.MethodsWe systematically screened eight potentially functional single-neucleotide polymorphism (SNPs) in the genes near rs73329476 (carboxypeptidase M (CPM) and cleavage and polyadenylation specific factor 6 (CPSF6)) in a case-control study including 177 cases with silicosis and 204 healthy controls, matched to cases with years of silica dust exposure. We evaluated the associations between these eight SNPs and the development of silicosis. Luciferase reporter gene assays were performed to test the effects of selected SNP on the activity of CPM in the promoter. In addition, a two-stage case-control study was performed to investigate the expression differences of the two genes in peripheral blood leucocytes from a total of 64 cases with silicosis and 64 healthy controls with similar years of silica dust exposure as the cases.ResultsWe found a strong association between the mutant rs12812500 G allele and the susceptibility of silicosis (OR=1.45, 95% CI 1.03 to 2.04, p=0.034), while luciferase reporter gene assays indicated that the mutant G allele of rs12812500 is strongly associated with increased luciferase levels compared with the wild-type C allele (p<0.01). Moreover, the mRNA (peripheral blood leucocytes) expression of the CPM gene was significantly higher in subjects with silicosis compared with healthy controls.ConclusionsThe rs12812500 variant of the CPM gene may increase silicosis susceptibility by affecting the expression of CPM, which may contribute to silicosis susceptibility with biological plausibility

Genetic Structures of Copy Number Variants Revealed by Genotyping Single Sperm

Copy number variants (CNVs) occupy a significant portion of the human genome and may have important roles in meiotic recombination, human genome evolution and gene expression. Many genetic diseases may be underlain by CNVs. However, because of the presence of their multiple copies, variability in copy numbers and the diploidy of the human genome, detailed genetic structure of CNVs cannot be readily studied by available techniques.Single sperm samples were used as the primary subjects for the study so that CNV haplotypes in the sperm donors could be studied individually. Forty-eight CNVs characterized in a previous study were analyzed using a microarray-based high-throughput genotyping method after multiplex amplification. Seventeen single nucleotide polymorphisms (SNPs) were also included as controls. Two single-base variants, either allelic or paralogous, could be discriminated for all markers. Microarray data were used to resolve SNP alleles and CNV haplotypes, to quantitatively assess the numbers and compositions of the paralogous segments in each CNV haplotype.This is the first study of the genetic structure of CNVs on a large scale. Resulting information may help understand evolution of the human genome, gain insight into many genetic processes, and discriminate between CNVs and SNPs. The highly sensitive high-throughput experimental system with haploid sperm samples as subjects may be used to facilitate detailed large-scale CNV analysis

A Long-Lived Accretionary Process during the Amalgamation of the North China Craton: Insights from Neoarchean–Paleoproterozoic Polyphase Magmatism in the Lüliang Complex

There has been a long debate regarding the timing of the final amalgamation of the North China Craton, which is considered to have occurred either during the Neoarchean or Paleoproterozoic era. One major point of contention is whether there existed a long-lived subduction lasting through the Neoarchean to Paleoproterozoic. The Lüliang Complex contains multiphases of magmatism and thus represents the most viable region to address this controversy. In this study, we carried geochronological and geochemical analysis on the representative granitoids. Secondary ion mass spectrometry U–Pb dating revealed four distinct granitoid groups emplaced at 2531 ± 4, 2189–2173, 2027 ± 25, and 1852 ± 41 Ma, respectively. Notably, the 2531 Ma granitic gneiss was identified for the first time in this region. Based on the geochemical characteristics, the granitoids can be divided into two types. The 2531 and 2027 Ma groups display I-type features, while the 2189–2173 and 1852 Ma groups exhibit A-type geochemical affinities. Both I-type groups exhibit enrichment in Rb, depletion in Nb, Ta, and Ti, moderate fractionated REE patterns, substantial negative Eu anomalies, low Sr/Y ratios, and positive εHf(t) (+3.51 to +5.53 and +5.59 to +7.32, respectively), indicating that they were generated from partial melting of the juvenile mafic crust. In contrast, the 2189–2173 Ma granitoids belong to A2-type and were most likely generated by the partial melting of felsic rocks in the back-arc region, while the 1852 Ma granitoids belong to A1-type and were most possibly the result of partial melting of mafic-intermediate rocks during the post-collisional stage. Based on the records of A-type granitic magmatism and the ~1950 Ma peak metamorphism throughout the Trans-North China Orogen, we propose that a long-lived subduction process (2531–1950 Ma) can mostly explain the existing geological phenomena. It is likely that the subduction between the Eastern and Western Blocks should have commenced at ~2531 Ma, followed by a long-lived subduction. The two blocks ultimately collided with each other to form the North China Craton at ~1950 Ma, which triggered post-collisional exhumation and partial melting at ~1852 Ma

RNA-Seq reveals the key pathways and genes involved in the light-regulated flavonoids biosynthesis in mango (Mangifera indica L.) peel

IntroductionFlavonoids are important water soluble secondary metabolites in plants, and light is one of the most essential environmental factors regulating flavonoids biosynthesis. In the previous study, we found bagging treatment significantly inhibited the accumulation of flavonols and anthocyanins but promoted the proanthocyanidins accumulation in the fruit peel of mango (Mangifera indica L.) cultivar ‘Sensation’, while the relevant molecular mechanism is still unknown.MethodsIn this study, RNA-seq was conducted to identify the key pathways and genes involved in the light-regulated flavonoids biosynthesis in mango peel.ResultsBy weighted gene co-expression network analysis (WGCNA), 16 flavonoids biosynthetic genes were crucial for different flavonoids compositions biosynthesis under bagging treatment in mango. The higher expression level of LAR (mango026327) in bagged samples might be the reason why light inhibits proanthocyanidins accumulation in mango peel. The reported MYB positively regulating anthocyanins biosynthesis in mango, MiMYB1, has also been identified by WGCNA in this study. Apart from MYB and bHLH, ERF, WRKY and bZIP were the three most important transcription factors (TFs) involved in the light-regulated flavonoids biosynthesis in mango, with both activators and repressors. Surprisingly, two HY5 transcripts, which are usually induced by light, showed higher expression level in bagged samples.DiscussionOur results provide new insights of the regulatory effect of light on the flavonoids biosynthesis in mango fruit peel