Additional file 3: Table S2. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

Conserved miRNAs identified in durum wheat Ciccio and Svevo cultivars by Illumina sequencing. MiRNAs were annotated according to miRBase release 21. (XLSX 16 kb

Additional file 1: Table S1. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

List of primers used for Q-RT-PCR assay for durum wheat miRNAs and their putative target genes. (XLSX 14 kb

Additional file 4: Table S3. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

Novel miRNAs from durum wheat identified in durum wheat Ciccio and Svevo cultivars by Illumina sequencing. MiRNAs were predicted in silico using similarity search and secondary structure analyses of putative pre-miRNAs sequences. (XLSX 51 kb

Additional file 2: Figure S1. of The miRNAome of durum wheat: isolation and characterisation of conserved and novel microRNAs and their target genes

Length distribution of small RNA sequences in two libraries obtained from durum wheat Ciccio and Svevo cultivars. (DOCX 15 kb

Cynara MSA for phylogeny

Cynara MSA for phylogen

Cynara maximum parsimony tree

Cynara maximum parsimony tre

Cynara MSA

Cynara MS

Summary of private alleles by accession.

<p>Summary of private alleles by accession.</p

Markers used to genotype 556 <i>Cynara cardunculus</i> individuals, with their genetic diversity parameters.

<p>Markers used to genotype 556 <i>Cynara cardunculus</i> individuals, with their genetic diversity parameters.</p

STRUCTURE analyses of 556 individuals based on 150˙000 permutations, No admixture model and K = 3.

<p>The accession order was: PleinBlancInerme, PuvisAmélioré, RougeAlger, VertVaulxVelin, BlancodeHuerva, BlancoPeralta, BlancoValencia, DelCortijo, LlenoEspaña, Lumbier, RojoAgreda, Sarramian, VerdeCalahorra, VerdePeralta, B1, B2, B7, Brindisino, Catanese, GagliardoSgrò, Mola, NiscemeseBA, NiscemeseCT, VioletProvenceI, ViolettoSicilia10, ViolettoSicilia13, ViolettoSicilia14, ViolettoSicilia3, ViolettoSicilia4, ViolettoSicilia61, ViolettoSicilia64, ViolettoSicilia98, ViolettoSiciliab3, ViolettoSiciliai2, ViolettoSiciliai3, ViolProvence41I, ViolProvence45I, ViolProvence73, ViolProvenceV, ViolProvenceVM, ViolProvenceVP, ViolProvenceVPG, ViolProvenceVR, Cacique, Chrysanthème, Escarot, VioletProvence45, VioletProvenceF, Brindisi, ChrysanthèmeS, Masedu, VioletProvence41S, Aquara, BiancoOstuni, Calimera, MC12, MC14, MC6, MO10, MO5, Motta, MT1, NeroCastrignano, NeroOstuni, Calice, GrosVertdeLaon, VertProvence, Carlit, France, Francesco, Italiana, BiancoPertosa, CamardI, CamerysI, CamusBretagneI, Capuanella, Isernia, Pietralcina, Pietrelcinab, RomanescoBA, RomanescoCT, TondoPaestum, Calico, Camard, Camus, Capitan, Caribou, Castel, Compact, Cric, Lira, Pètre, Popver, Romain, Salambo, Salanquet, Vertu, Apollo, C3, CalicoRojoCR, CalicoVerdeCB, CamerysS, CampagnanoS, CamusBretagneBH8, CamusBretagneS, CaribouSp, Macau, Moretto, MutRomanesco, Ñato, SalamboS, SalanquetS, Ascolano, Campagnano, GratoI, Jesino, MonteluponeA, MonteluponeB, Paestum, Pertosa, Pisa, S1, S10, S11, S13, S15, S16, S17, S18, S2, S20, S22, S23, S25, S26, S3, S30, S4, S5, S6, T31, T32, T33, T34, T35, T36, T37, T38, T39, TondoRossoPaestum, SpinosoPalermo, SpinosoViolLiguria, Criolla, Hysponos, SpinosoSardo, BlancHyèroisI, Blancal, BlancHyérois, Cabeza de gato, Clon303, INIA-B, INIA-D, ITGA, PAT89, SErasmo, TeromBA, TeromCT, VioletGapeauI, ViolettoMaremma, ViolettoToscana, Velours, VioletCamargue, VioletGapeau, Hydes.</p