Algebraic Comparison of Partial Lists in Bioinformatics

The outcome of a functional genomics pipeline is usually a partial list of genomic features, ranked by their relevance in modelling biological phenotype in terms of a classification or regression model. Due to resampling protocols or just within a meta-analysis comparison, instead of one list it is often the case that sets of alternative feature lists (possibly of different lengths) are obtained. Here we introduce a method, based on the algebraic theory of symmetric groups, for studying the variability between lists ("list stability") in the case of lists of unequal length. We provide algorithms evaluating stability for lists embedded in the full feature set or just limited to the features occurring in the partial lists. The method is demonstrated first on synthetic data in a gene filtering task and then for finding gene profiles on a recent prostate cancer dataset

The Effects of Irreversible Electroporation (IRE) on Nerves

Background: If a critical nerve is circumferentially involved with tumor, radical surgery intended to cure the cancer must sacrifice the nerve. Loss of critical nerves may lead to serious consequences. In spite of the impressive technical advancements in nerve reconstruction, complete recovery and normalization of nerve function is difficult to achieve. Though irreversible electroporation (IRE) might be a promising choice to treat tumors near or involved critical nerve, the pathophysiology of the nerve after IRE treatment has not be clearly defined. Methods: We applied IRE directly to a rat sciatic nerve to study the long term effects of IRE on the nerve. A sequence of 10 square pulses of 3800 V/cm, each 100 ms long was applied directly to rat sciatic nerves. In each animal of group I (IRE) the procedure was applied to produce a treated length of about 10 mm. In each animal of group II (Control) the electrodes were only applied directly on the sciatic nerve for the same time. Electrophysiological, histological, and functional studies were performed on immediately after and 3 days, 1 week, 3, 5, 7 and 10 weeks following surgery. Findings: Electrophysiological, histological, and functional results show the nerve treated with IRE can attain full recovery after 7 weeks. Conclusion: This finding is indicative of the preservation of nerve involving malignant tumors with respect to the application of IRE pulses to ablate tumors completely. In summary, IRE may be a promising treatment tool for any tumor involving nerves

Beyond equilibrium climate sensitivity

ISSN:1752-0908ISSN:1752-089

TRIZ-Based Approach for Process Intensification and Problem Solving in Process Engineering: Concepts and Research Agenda

Process engineering (PE) focuses on the design, operation, control and optimization of chemical, physical and biological processes and has applications in many industries. Process intensification (PI) is the key development approach in the modern process engineering. The theory of inventive problem solving (TRIZ) is today considered as the most comprehensive and systematically organized invention knowledge and creative thinking methodology. This paper analyses the opportunities of TRIZ application in PE and especially in combination with PI. In this context the paper outlines the major challenges for TRIZ application in PE, conceptualizes a possible TRIZ-based approach for process intensification and problem solving in PE, and defines the corresponding research agenda. It also presents the results of the original empirical innovation research in the field of solid handling in the ceramic industry, demonstrates a method for identification and prediction of contradictions and introduces the concept of the probability of contradiction occurrence. Additionally, it describes a technique of process mapping that is based on the function and multi-screen analysis of the processes. This technique is illustrated by a case study dealing with granulation process. The research work presented in this paper is a part of the European project “Intensified by Design® platform for the intensification of processes involving solids handling”