A trivial observation on time reversal in random matrix theory

It is commonly thought that a state-dependent quantity, after being averaged over a classical ensemble of random Hamiltonians, will always become independent of the state. We point out that this is in general incorrect: if the ensemble of Hamiltonians is time reversal invariant, and the quantity involves the state in higher than bilinear order, then we show that the quantity is only a constant over the orbits of the invariance group on the Hilbert space. Examples include fidelity and decoherence in appropriate models.Comment: 7 pages 3 figure

Fidelity amplitude of the scattering matrix in microwave cavities

The concept of fidelity decay is discussed from the point of view of the scattering matrix, and the scattering fidelity is introduced as the parametric cross-correlation of a given S-matrix element, taken in the time domain, normalized by the corresponding autocorrelation function. We show that for chaotic systems, this quantity represents the usual fidelity amplitude, if appropriate ensemble and/or energy averages are taken. We present a microwave experiment where the scattering fidelity is measured for an ensemble of chaotic systems. The results are in excellent agreement with random matrix theory for the standard fidelity amplitude. The only parameter, namely the perturbation strength could be determined independently from level dynamics of the system, thus providing a parameter free agreement between theory and experiment

Random matrix description of decaying quantum systems

This contribution describes a statistical model for decaying quantum systems (e.g. photo-dissociation or -ionization). It takes the interference between direct and indirect decay processes explicitely into account. The resulting expressions for the partial decay amplitudes and the corresponding cross sections may be considered a many-channel many-resonance generalization of Fano's original work on resonance lineshapes [Phys. Rev 124, 1866 (1961)]. A statistical (random matrix) model is then introduced. It allows to describe chaotic scattering systems with tunable couplings to the decay channels. We focus on the autocorrelation function of the total (photo) cross section, and we find that it depends on the same combination of parameters, as the Fano-parameter distribution. These combinations are statistical variants of the one-channel Fano parameter. It is thus possible to study Fano interference (i.e. the interference between direct and indirect decay paths) on the basis of the autocorrelation function, and thereby in the regime of overlapping resonances. It allows us, to study the Fano interference in the limit of strongly overlapping resonances, where we find a persisting effect on the level of the weak localization correction.Comment: 16 pages, 2 figure

A random matrix approach to decoherence

In order to analyze the effect of chaos or order on the rate of decoherence in a subsystem, we aim to distinguish effects of the two types of dynamics by choosing initial states as random product states from two factor spaces representing two subsystems. We introduce a random matrix model that permits to vary the coupling strength between the subsystems. The case of strong coupling is analyzed in detail, and we find no significant differences except for very low-dimensional spaces.Comment: 11 pages, 5 eps-figure

Microwave fidelity studies by varying antenna coupling

The fidelity decay in a microwave billiard is considered, where the coupling to an attached antenna is varied. The resulting quantity, coupling fidelity, is experimentally studied for three different terminators of the varied antenna: a hard wall reflection, an open wall reflection, and a 50 Ohm load, corresponding to a totally open channel. The model description in terms of an effective Hamiltonian with a complex coupling constant is given. Quantitative agreement is found with the theory obtained from a modified VWZ approach [Verbaarschot et al, Phys. Rep. 129, 367 (1985)].Comment: 9 pages 5 figur

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces

<p>Abstract</p> <p>Background</p> <p>Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal the details of their function and provide a basis for many computational and experimental approaches. Differentiation between biological and non-biological contacts and reconstruction of the intact complex is a challenging computational problem. A successful solution can provide additional insights into the fundamental principles of biological recognition and reduce errors in many algorithms and databases utilizing interaction information extracted from the Protein Data Bank (PDB).</p> <p>Results</p> <p>We have developed a method for identifying protein complexes in the PDB X-ray structures by a four step procedure: (1) comprehensively collecting all protein-protein interfaces; (2) clustering similar protein-protein interfaces together; (3) estimating the probability that each cluster is relevant based on a diverse set of properties; and (4) combining these scores for each PDB entry in order to predict the complex structure. The resulting clusters of biologically relevant interfaces provide a reliable catalog of evolutionary conserved protein-protein interactions. These interfaces, as well as the predicted protein complexes, are available from the Protein Interface Server (PInS) website (see Availability and requirements section).</p> <p>Conclusion</p> <p>Our method demonstrates an almost two-fold reduction of the annotation error rate as evaluated on a large benchmark set of complexes validated from the literature. We also estimate relative contributions of each interface property to the accurate discrimination of biologically relevant interfaces and discuss possible directions for further improving the prediction method.</p

Anomalous slow fidelity decay for symmetry breaking perturbations

Symmetries as well as other special conditions can cause anomalous slowing down of fidelity decay. These situations will be characterized, and a family of random matrix models to emulate them generically presented. An analytic solution based on exponentiated linear response will be given. For one representative case the exact solution is obtained from a supersymmetric calculation. The results agree well with dynamical calculations for a kicked top.Comment: 4 pages, 2 figure

Low rank perturbations and the spectral statistics of pseudointegrable billiards

We present an efficient method to solve Schr\"odinger's equation for perturbations of low rank. In particular, the method allows to calculate the level counting function with very little numerical effort. To illustrate the power of the method, we calculate the number variance for two pseudointegrable quantum billiards: the barrier billiard and the right triangle billiard (smallest angle $\pi/5$). In this way, we obtain precise estimates for the level compressibility in the semiclassical (high energy) limit. In both cases, our results confirm recent theoretical predictions, based on periodic orbit summation.Comment: 4 page