Geology, geochemistry and Sr–Nd constraints of selected metavolcanic rocks from the eastern boundary of the Saharan Metacraton, southern Sudan : a possible revision of the eastern boundary

Neoproterozoic, Pan-African low-grade metavolcanic rocks and associated mafic and ultramafic rocks of ophiolitic origin have long been identified within the pre-Neoproterozoic Saharan Metacraton (SMC). These low-grade rocks within generally high-grade (upper amphibolite facies) gneiss and schist have not yet been fully investigated, and their geological and geotectonic significance have been recognised only in a very few localities: (1) the Delgo–Atmur ophiolite and low-grade volcano-sedimentary belt, (2) the Rahib ophiolite and low-grade sedimentary fold and thrust belt, both in northern Sudan along the eastern boundary of the Saharan Metacraton and (3) the low-grade volcano-sedimentary rocks in the Central African Republic. Dismembered and low-grade metamorphosed occurrences of mafic extrusive and intrusive and minor ultramafic rocks, grouped as the Arid unit, similar to those of the Arabian Nubian Shield (ANS), are reported here for the first time in the westernmost part of the Nuba Mountains, southeastern Sudan. These occurrences are interpreted to represent part of an ophiolite sequence with a lower cumulate layer composed of layered gabbro and minor cumulate hornblendite and a top layer of thick massive gabbro, pillowed basalt and basaltic andesite. The Arid unit is structurally underlain by basaltic-andesite and andesite and a metasedimentary sequence identified as turbidite and both grouped as the Abutulu unit. All of the rocks are slightly sheared, deformed and metamorphosed under low-grade greenschist facies to epidote amphibolite sub-facies. New geochemical and Sr–Nd isotope data reveal that the low-grade metavolcanic rocks of the westernmost Nuba Mountains represent a Neoproterozoic oceanic arc/backarc assemblage. The massive gabbro and pillowed basalt of the Arid unit show the geochemical characteristics of HFSE-depleted tholeiitic basalt while the co-genetic and more evolved meta-andesite of Abutulu unit show a calc-alkaline signature. Both units display a REE pattern characterized by LILE enrichment indicating formation in an arc/back-arc environment. This arc was active at around 778 ± 90 Ma (Sm– Nd 12 WR isochron) that is similar in age to the arc magmatism in the ANS. The close interval between the TDM Nd model age (average of 10 metavolcanic samples is 814 Ma) and the crystallization age (778 ± 90 Ma) is indicative of little or no involvement of older material. The western Nuba Mountains metavolcanic rocks have eNd values of +5.9 at 778 Ma (average of 12 samples) indicating a depleted mantle source similar to that of the ANS (published range from +6.5 to +8.4). The eNd values of the metavolcanic rocks are different from previously published ages of high-grade basement rocks that occupy the area west of the Kabus suture and east of Abutulu (+2.2 and +3.5 for the Rashad and Abbassyia). It is proposed that the metavolcanic and associated plutonic mafic rocks represent a unique Neoproterozoic entity named the Abutulu terrane that developed in a marginal back-arc basin west of the medium-grade gneiss of the Nuba Mountains. If the Abutulu terrane is included as a part of the ANS, then the eastern boundary of the SMC is adjacent to the western edge of the ANS along the Abutulu suture.http://www.elsevier.com/locate/precamres2017-08-31hb2016Geolog

Phase Separation of Rigid-Rod Suspensions in Shear Flow

We analyze the behavior of a suspension of rigid rod-like particles in shear flow using a modified version of the Doi model, and construct diagrams for phase coexistence under conditions of constant imposed stress and constant imposed strain rate, among paranematic, flow-aligning nematic, and log-rolling nematic states. We calculate the effective constitutive relations that would be measured through the regime of phase separation into shear bands. We calculate phase coexistence by examining the stability of interfacial steady states and find a wide range of possible ``phase'' behaviors.Comment: 23 pages 19 figures, revised version to be published in Physical Review

Preharvest foliar sprays of prohexadione-calcium, a gibberellin-biosynthesis inhibitor, induce chlorophyll degradation and carotenoid synthesis in citrus rinds

Rind color is an important cosmetic preference of consumers when purchasing citrus fruit. As citrus fruit mature, a decrease in chlorophyll concentration unmasks the presence of carotenoid pigments followed by further synthesis of carotenoids, resulting in the first appearance of the characteristic orange color of mandarins and sweet oranges. Factors contributing to invigorating growing conditions are antagonistic to optimal rind color development and tree vegetative vigor as well as high gibberellin and cytokinin levels are also thought to adversely affect rind color. Thus, a method to increase preharvest rind color by moderating vegetative vigor using a growth retardant was investigated. Prohexadione-calcium (ProCa; Regalis), a gibberellin-biosynthesis in-hibitor with growth retardant activity, was applied to 'Nules Clementine' mandarin (Citrus reticulata Blanco), 'Navelina Navel' orange [C. sinensis (L.) Osbeck], and 'Eureka' lemon [C. limon (L.) Burm. f.] during the 2005 and 2006 seasons at 200 and 400 mg L-1 a.i. Rind color rating, colorimeter measurements, and pigment analyses were conducted directly after harvest, after ethylene degreening, and 3 weeks after cold storage. In the 2005 season, ProCa significantly increased rind color of 'Nules Clementine' mandarin and 'Navelina Navel' orange directly after harvest and after ethylene degreening by decreasing chlorophyll and increasing carotenoid concentrations in the flavedo of fruit but did not affect the pigment concentration of 'Eureka' lemon despite an improvement in rind color rating. After cold storage, however, rind color was not significantly different among treatments. In the 2006 season, rind color was significantly increased directly after harvest, and chlorophyll degradation together with carotenoid synthesis of all Citrus spp. tested were stimulated by the late 400 mg L-1 ProCa application. Therefore, foliar spray application of ProCa at a concentration of 400 mg L-1 applied 6 plus 3 weeks before anticipated harvest has the potential to increase preharvest rind color of early-maturing citrus cultivars as a result of increased carotenoid-to-chlorophyll ratio. This treatment provides a novel approach to manipulate chlorophyll degradation and carotenoid synthesis in citrus fruit, and these results support the hypothesis that there may be an inverse relationship between vegetative vigor and rind color development of citrus fruit. Therefore, by moderating vegetative vigor through the use of growth retardants, rind color of citrus fruit can be enhanced.Articl

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone.

The use of molecular data to reconstruct the history of divergence and gene flow between populations of closely related taxa represents a challenging problem. It has been proposed that the long-standing debate about the geography of speciation can be resolved by comparing the likelihoods of a model of isolation with migration and a model of secondary contact. However, data are commonly only fit to a model of isolation with migration and rarely tested against the secondary contact alternative. Furthermore, most demographic inference methods have neglected variation in introgression rates and assume that the gene flow parameter (Nm) is similar among loci. Here, we show that neglecting this source of variation can give misleading results. We analysed DNA sequences sampled from populations of the marine mussels, Mytilus edulis and M. galloprovincialis, across a well-studied mosaic hybrid zone in Europe and evaluated various scenarios of speciation, with or without variation in introgression rates, using an Approximate Bayesian Computation (ABC) approach. Models with heterogeneous gene flow across loci always outperformed models assuming equal migration rates irrespective of the history of gene flow being considered. By incorporating this heterogeneity, the best-supported scenario was a long period of allopatric isolation during the first three-quarters of the time since divergence followed by secondary contact and introgression during the last quarter. By contrast, constraining migration to be homogeneous failed to discriminate among any of the different models of gene flow tested. Our simulations thus provide statistical support for the secondary contact scenario in the European Mytilus hybrid zone that the standard coalescent approach failed to confirm. Our results demonstrate that genomic variation in introgression rates can have profound impacts on the biological conclusions drawn from inference methods and needs to be incorporated in future studies

Sequencing the Major Mycosphaerella Pathogens of Wheat and Banana

Mycosphaerella is one of the largest genera of plant pathogenic fungi with more than 1,000 named species, many of which are important pathogens causing leaf spotting diseases in a wide variety of crops including cereals, citrus, banana, eucalypts, soft fruits, and horticultural crops. A few species of Mycosphaerella cause disease in humans and other vertebrates. An international project was initiated to sequence the genomes of M. graminicola and M. fijiensis, two of the most economically important pathogens of wheat and banana, respectively, along with 40,000 ESTs from M. fijiensis and the related maize pathogen Cercospora zeae-maydis, through the Community Sequencing Program sponsored by the U.S. DOE-Joint Genome Institute. The 9x M. graminicola sequencing is complete and was made public November 1, 2006 following automated and manual annotation. Due to the very good assembly statistics as well as a >2000-marker DArT linkage map that was aligned to the genome, JGI decided to finish the M. graminicola genome at the Stanford Human Genome Center. The majority of chromosomes have been sequenced completely including both telomeres. These data indicate that M. graminicola has both the largest chromosome number and the smallest chromosome sizes recorded among filamentous ascomycetes. The M. fijiensis EST sequencing has resulted in more than 30,000 ESTs and the genome sequencing is currently at approximately 2.5x, which enabled us to revise the genome size estimate of M. fijiensis to approximately 68 Mb, which is 70% larger than that for M. graminicola. The current status of both sequencing projects will be discussed.