Switching to nonhyperbolic cycles from codimension two bifurcations of equilibria of delay differential equations

In this paper we perform the parameter-dependent center manifold reduction near the generalized Hopf (Bautin), fold-Hopf, Hopf-Hopf and transcritical-Hopf bifurcations in delay differential equations (DDEs). This allows us to initialize the continuation of codimension one equilibria and cycle bifurcations emanating from these codimension two bifurcation points. The normal form coefficients are derived in the functional analytic perturbation framework for dual semigroups (sun-star calculus) using a normalization technique based on the Fredholm alternative. The obtained expressions give explicit formulas which have been implemented in the freely available numerical software package DDE-BifTool. While our theoretical results are proven to apply more generally, the software implementation and examples focus on DDEs with finitely many discrete delays. Together with the continuation capabilities of DDE-BifTool, this provides a powerful tool to study the dynamics near equilibria of such DDEs. The effectiveness is demonstrated on various models

Structure and stability of chiral beta-tapes: a computational coarse-grained approach

We present two coarse-grained models of different levels of detail for the description of beta-sheet tapes obtained from equilibrium self-assembly of short rationally designed oligopeptides in solution. Here we only consider the case of the homopolymer oligopeptides with the identical sidegroups attached, in which the tapes have a helicoid surface with two equivalent sides. The influence of the chirality parameter on the geometrical characteristics, namely the diameter, inter-strand distance and pitch, of the tapes have been investigated. The two models are found to produceequivalent results suggesting a considerable degree of universality in conformations of the tapes.Comment: 24 pages, 5 PS figures. Accepted to J. Chem. Phy

Dark matter-wave solitons in the dimensionality crossover

We consider the statics and dynamics of dark matter-wave solitons in the dimensionality crossover regime from 3D to 1D. There, using the nonpolynomial Schr\"{o}dinger mean-field model, we find that the anomalous mode of the Bogoliubov spectrum has an eigenfrequency which coincides with the soliton oscillation frequency obtained by the 3D Gross-Pitaevskii model. We show that substantial deviations (of order of 10% or more) from the characteristic frequency $\omega_{z}/\sqrt{2}$ ($\omega_{z}$ being the longitudinal trap frequency) are possible even in the purely 1D regime.Comment: Phys. Rev. A, in pres

Catecholamines and myocardial contractile function during hypodynamia and with an altered thyroid hormone balance

The dynamics of catecholamine content and myocardial contractile function during hypodynamia were studied in 109 white rats whose motor activity was severely restricted for up to 30 days. During the first five days myocardial catecholamine content, contractile function, and physical load tolerance decreased. Small doses of thyroidin counteracted this tendency. After 15 days, noradrenalin content and other indices approached normal levels and, after 30 days, were the same as control levels, although cardiac functional reserve was decreased. Thyroidin administration after 15 days had no noticeable effect. A detailed table shows changes in 17 indices of myocardial contractile function during hypodynamia

Hyperbolic chaos in self-oscillating systems based on mechanical triple linkage: Testing absence of tangencies of stable and unstable manifolds for phase trajectories

Dynamical equations are formulated and a numerical study is provided for self-oscillatory model systems based on the triple linkage hinge mechanism of Thurston -- Weeks -- Hunt -- MacKay. We consider systems with holonomic mechanical constraint of three rotators as well as systems, where three rotators interact by potential forces. We present and discuss some quantitative characteristics of the chaotic regimes (Lyapunov exponents, power spectrum). Chaotic dynamics of the models we consider are associated with hyperbolic attractors, at least, at relatively small supercriticality of the self-oscillating modes; that follows from numerical analysis of the distribution for angles of intersection of stable and unstable manifolds of phase trajectories on the attractors. In systems based on rotators with interacting potential the hyperbolicity is violated starting from a certain level of excitation.Comment: 30 pages, 18 figure

Limitations of PLL simulation: hidden oscillations in MatLab and SPICE

Nonlinear analysis of the phase-locked loop (PLL) based circuits is a challenging task, thus in modern engineering literature simplified mathematical models and simulation are widely used for their study. In this work the limitations of numerical approach is discussed and it is shown that, e.g. hidden oscillations may not be found by simulation. Corresponding examples in SPICE and MatLab, which may lead to wrong conclusions concerning the operability of PLL-based circuits, are presented