Benchmarking of a 1D Scrape-off layer code SOLF1D with SOLPS and its use in modelling long-legged divertors

A 1D code modelling SOL transport parallel to the magnetic field (SOLF1D) is benchmarked with 2D simulations of MAST-U SOL performed via the SOLPS code for two different collisionalities. Based on this comparison, SOLF1D is then used to model the effects of divertor leg stretching in 1D, in support of the planned Super-X divertor on MAST. The aim is to separate magnetic flux expansion from volumetric power losses due to recycling neutrals by stretching the divertor leg either vertically or radially.Comment: 31 pages, 17 figures. This is an author-created, un-copyedited version of an article accepted for publication in Plasma Physics and Controlled Fusion. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from i

Investigation of conventional and Super-X divertor configurations of MAST Upgrade using SOLPS

One of the first studies of MAST Upgrade divertor configurations with SOLPS5.0 are presented. We focus on understanding main prospects associated with the novel geometry of the Super-X divertor (SXD). This includes a discussion of the effect of magnetic flux expansion and volumetric power losses on the reduction of target power loads, the effect of divertor geometry on the divertor closure and distribution of neutral species and radiation in the divertor, the role of the connection length in broadening the target wetted area. A comparison in conditions typical for MAST inter-ELM H-mode plasmas confirms improved performance of the Super-X topology resulting in significantly better divertor closure with respect to neutrals (the atomic flux from the target increased by a factor of 6, but the atomic flux from the divertor to the upper SOL reduced by a factor of 2), increased radiation volume and increased total power loss (a factor of 2) and a reduction of target power loads through both magnetic flux expansion and larger volumetric power loss in the divertor (a factor of 5-10 in attached plasmas). The reduction of the target power load by SXD further increases with collisionality (high density or detached regimes) thanks to larger importance of volumetric power losses. It is found that a cold divertor plasma leads to stronger parallel temperature gradients in the SOL which drive more parallel heat flux, meaning that the effectiveness of perpendicular transport in spreading the power at the target can be reduced, and this needs to be taken into account in any optimisation.Comment: 32 pages, 23 figures. This is an author-created, un-copyedited version of an article accepted for publication in PPCF. IOP Publishing Ltd and IAEA are not responsible for any errors or omissions in this version of the manuscript or any version derived from i

A fruit diet rather than invertebrate diet maintains a robust innate immunity in an omnivorous tropical songbird

Experiments were funded by the Royal Netherlands Academy of Arts and Sciences (KNAW) Academy Ecology Fund to C.J.N—(KENMERK J1618/ECO/G437). C.J.N. was supported by a studentship funded by the Leventis Conservation Foundation through the University of St. Andrews UK and an Ubbo Emmius grant of the University of Groningen, The Netherlands. B.I.T. was supported by the Netherlands Organisation for Scientific Research (NWO‐Vidi 864.10.012).1. Diet alteration may lead to nutrient limitations even in the absence of food limitation, and this may affect physiological functions, including immunity. Nutrient limitations may also affect the maintenance of body mass and key life history events that may affect immune function. Yet, variation in immune function is largely attributed to energetic trade-offs rather than specific nutrient constraints. 2. To test the effect of diet on life history traits, we tested how diet composition affects innate immune function, body mass and moult separately and in combination with each other, and then used path analyses to generate hypotheses about the mechanistic connections between immunity and body mass under different diet composition. 3. We performed a balanced parallel and crossover design experiment with omnivorous common bulbuls Pycnonotus barbatus in out-door aviaries in Nigeria. We fed 40 wild-caught bulbuls ad libitum on fruits or invertebrates for 24 weeks, switching half of each group between treatments after 12 weeks. We assessed innate immune indices (haptoglobin, nitric oxide and ovotransferrin concentrations, and haemagglutination and haemolysis titres), body mass and primary moult, fortnightly. We simplified immune indices into three principal components (PCs), but we explored mechanistic connections between diet, body mass and each immune index separately. 4. Fruit fed bulbuls had higher body mass, earlier moult and showed higher values for two of the three immune PCs compared to invertebrate fed bulbuls. These effects were reversed when we switched bulbuls between treatments after 12 weeks. Exploring the correlations between immune function, body mass and moult, showed that an increase in immune function was associated with a decrease in body mass and delayed moult in invertebrate fed bulbuls, while fruit fed bulbuls maintained body mass despite variation in immune function. Path analyses indicated that diet composition was most likely to affect body mass and immune indices directly and independently from each other. Only haptoglobin concentration was indirectly linked to diet composition via body mass. 5. We demonstrated a causal effect of diet composition on innate immune function, body mass and moult: bulbuls were in better condition when fed on fruits than invertebrates, confirming that innate immunity is nutrient specific. Our results are unique because they show a reversible effect of diet composition on wild adult birds whose immune systems are presumably fully developed and adapted to wild conditions – demonstrating a short-term consequence of diet alteration on life history traits.Publisher PDFPeer reviewe

Quaternary land bridges have not been universal conduits of gene flow

Quaternary climate oscillations are a well‐known driver of animal diversification, but their effects are most well studied in areas where glaciations lead to habitat fragmentation. In large areas of the planet, however, glaciations have had the opposite effect, but here their impacts are much less well understood. This is especially true in Southeast Asia, where cyclical changes in land distribution have generated enormous land expansions during glacial periods. In this study, we selected a panel of five songbird species complexes covering a range of ecological specificities to investigate the effects Quaternary land bridges have had on the connectivity of Southeast Asian forest biota. Specifically, we combined morphological and bioacoustic analysis with an arsenal of population genomic and modelling approaches applied to thousands of genome‐wide DNA markers across a total of more than 100 individuals. Our analyses show that species dependent on forest understorey exhibit deep differentiation between Borneo and western Sundaland, with no evidence of gene flow during the land bridges accompanying the last 1–2 ice ages. In contrast, dispersive canopy species and habitat generalists have experienced more recent gene flow. Our results argue that there remains much cryptic species‐level diversity to be discovered in Southeast Asia even in well‐known animal groups such as birds, especially in nondispersive forest understorey inhabitants. We also demonstrate that Quaternary land bridges have not been equally suitable conduits of gene flow for all species complexes and that life history is a major factor in predicting relative population divergence time across Quaternary climate fluctuations

A sandpile model with tokamak-like enhanced confinement phenomenology

Confinement phenomenology characteristic of magnetically confined plasmas emerges naturally from a simple sandpile algorithm when the parameter controlling redistribution scalelength is varied. Close analogues are found for enhanced confinement, edge pedestals, and edge localised modes (ELMs), and for the qualitative correlations between them. These results suggest that tokamak observations of avalanching transport are deeply linked to the existence of enhanced confinement and ELMs.Comment: Manuscript is revtex (latex) 1 file, 7 postscript figures Revised version is final version accepted for publication in PRL Revisions are mino