Avalanche statistics and time-resolved grain dynamics for a driven heap

We probe the dynamics of intermittent avalanches caused by steady addition of grains to a quasi-two dimensional heap. To characterize the time-dependent average avalanche flow speed v(t), we image the top free surface. To characterize the grain fluctuation speed dv(t), we use Speckle-Visibility Spectroscopy. During an avalanche, we find that the fluctuation speed is approximately one-tenth the average flow speed, and that these speeds are largest near the beginning of an event. We also find that the distribution of event durations is peaked, and that event sizes are correlated with the time interval since the end of the previous event. At high rates of grain addition, where successive avalanches merge into smooth continuous flow, the relationship between average and fluctuation speeds changes to dv Sqrt[v]

Effect of moisture content and drying method on the amylose content of rice

Rice is a primary source to all human beings. It gives energy and supply carbohydrate in human daily life. It is also one of the main sources of employment for people living in the rural area to generate incomes. In this study, determinations of quality of rice dried in an oven and in a Laterally Aerated Moving Bed (LAMB) dryer were performed., tTe drying in an oven was performed with initial moisture content (MC) of 18% reduced to 14% w.b. at temperatures of 35, 45, 55, 65 and 75 0C. The amylose contents of the rice were 20.78, 21.81, 21.53, 21.63 and 22.50%, respectively. Furthermore, drying of paddy with temperature of 45 0C and initial moisture content of 15% w.b was performed with different final moisture content of 14, 12, 10 and 8% w.b using oven drying. The amylose content were 21.79, 20.17, 20.85, 26.35%, respectively. As for paddy dried in LAMB dryer, it was found that the amylose content were in the intermediate range (20 - 25.50%). The drying temperature of the LAMB dryer was at 25 0C with 100 to 200 L/min of air flowrate resulted in the intermediate amylose content of the rice despite the final moisture content reduced to 8% w.b

Measurements of the Casimir-Lifshitz force in fluids: the effect of electrostatic forces and Debye screening

In this work, we present detailed measurements of the Casimir-Lifshitz force between two gold surfaces (a sphere and a plate) immersed in ethanol and study the effect of residual electrostatic forces, which are dominated by static fields within the apparatus and can be reduced with proper shielding. Electrostatic forces are further reduced by Debye screening through the addition of salt ions to the liquid. Additionally, the salt leads to a reduction of the Casimir-Lifshitz force by screening the zero-frequency contribution to the force; however, the effect is small between gold surfaces at the measured separations and within experimental error. An improved calibration procedure is described and compared to previous methods. Finally, the experimental results are compared to Lifshitz's theory and found to be consistent for the materials used in the experiment.Comment: 11 figures. PRA in pres

Transcriptome Analyses of Tumor-Adjacent Somatic Tissues Reveal Genes Co-Expressed with Transposable Elements

Background: Despite the long-held assumption that transposons are normally only expressed in the germ-line, recent evidence shows that transcripts of transposable element (TE) sequences are frequently found in the somatic cells. However, the extent of variation in TE transcript levels across different tissues and different individuals are unknown, and the co-expression between TEs and host gene mRNAs have not been examined. Results: Here we report the variation in TE derived transcript levels across tissues and between individuals observed in the non-tumorous tissues collected for The Cancer Genome Atlas. We found core TE co-expression modules consisting mainly of transposons, showing correlated expression across broad classes of TEs. Despite this co-expression within tissues, there are individual TE loci that exhibit tissue-specific expression patterns, when compared across tissues. The core TE modules were negatively correlated with other gene modules that consisted of immune response genes in interferon signaling. KRAB Zinc Finger Proteins (KZFPs) were over-represented gene members of the TE modules, showing positive correlation across multiple tissues. But we did not find overlap between TE-KZFP pairs that are co-expressed and TE-KZFP pairs that are bound in published ChIP-seq studies. Conclusions: We find unexpected variation in TE derived transcripts, within and across non-tumorous tissues. We describe a broad view of the RNA state for non-tumorous tissues exhibiting higher level of TE transcripts. Tissues with higher level of TE transcripts have a broad range of TEs co-expressed, with high expression of a large number of KZFPs, and lower RNA levels of immune genes

Levels of self-consistency in the GW approximation

We perform $GW$ calculations on atoms and diatomic molecules at different levels of self-consistency and investigate the effects of self-consistency on total energies, ionization potentials and on particle number conservation. We further propose a partially self-consistent $GW$ scheme in which we keep the correlation part of the self-energy fixed within the self-consistency cycle. This approximation is compared to the fully self-consistent $GW$ results and to the $G W_0$ and the $G_0W_0$ approximations. Total energies, ionization potentials and two-electron removal energies obtained with our partially self-consistent $GW$ approximation are in excellent agreement with fully self-consistent $GW$ results while requiring only a fraction of the computational effort. We also find that self-consistent and partially self-consistent schemes provide ionization energies of similar quality as the $G_0W_0$ values but yield better total energies and energy differences.Comment: 11 pages, 3 figures, 3 table

PERK/eIF2 alpha signaling inhibits HIF-induced gene expression during the unfolded protein response via YB1-dependent regulation of HIF1 alpha translation

HIF1α (hypoxia inducible factor 1α) is the central regulator of the cellular response to low oxygen and its activity is deregulated in multiple human pathologies. Consequently, given the importance of HIF signaling in disease, there is considerable interest in developing strategies to modulate HIF1α activity and down-stream signaling events. In the present study we find that under hypoxic conditions, activation of the PERK branch of the unfolded protein response (UPR) can suppress the levels and activity of HIF1α by preventing efficient HIF1α translation. Activation of PERK inhibits de novo HIF1α protein synthesis by preventing the RNA-binding protein, YB-1, from interacting with the HIF1α mRNA 5′UTR. Our data indicate that activation of the UPR can sensitise tumor cells to hypoxic stress, indicating that chemical activation of the UPR could be a strategy to target hypoxic malignant cancer cells

The Size and Shape of Voids in Three-Dimensional Galaxy Surveys

The sizes and shapes of voids in a galaxy survey depend not only on the physics of structure formation, but also on the sampling density of the survey and on the algorithm used to define voids. Using an N-body simulation with a CDM power spectrum, we study the properties of voids in samples with different number densities of galaxies, both in redshift space and in real space. When voids are defined as regions totally empty of galaxies, their characteristic volume is strongly dependent on sampling density; when they are defined as regions whose density is 0.2 times the mean galaxy density, the dependence is less strong. We compare two void-finding algorithms, one in which voids are nonoverlapping spheres, and one, based on the algorithm of Aikio and Mahonen, which does not predefine the shape of a void. Regardless of the algorithm chosen, the characteristic void size is larger in redshift space than in real space, and is larger for low sampling densities than for high sampling densities. We define an elongation statistic Q which measures the tendency of voids to be stretched or squashed along the line of sight. Using this statistic, we find that at sufficiently high sampling densities (comparable to the number densities of galaxies brighter than L_*), large voids tend to be slightly elongated along the line of sight in redshift space.Comment: LaTex, 21 pages (including 7 figures), ApJ, submitte

A New Refinement-Free Preconditioner for the Symmetric Formulation in Electroencephalography

Widely employed for the accurate solution of the electroencephalography forward problem, the symmetric formulation gives rise to a first kind, ill-conditioned operator illsuited for complex modelling scenarios. This work presents a novel preconditioning strategy based on an accurate spectral analysis of the operators involved which, differently from other Calderón-based approaches, does not necessitate the barycentric refinement of the primal mesh (i.e., no dual matrix is required). The discretization of the new formulation gives rise to a well-conditioned, symmetric, positive-definite system matrix, which can be efficiently solved via fast iterative techniques. Numerical results for both canonical and realistic head models validate the effectiveness of the proposed formulation