Real-time lattice boltzmann shallow waters method for breaking wave simulations

We present a new approach for the simulation of surfacebased fluids based in a hybrid formulation of Lattice Boltzmann Method for Shallow Waters and particle systems. The modified LBM can handle arbitrary underlying terrain conditions and arbitrary fluid depth. It also introduces a novel method for tracking dry-wet regions and moving boundaries. Dynamic rigid bodies are also included in our simulations using a two-way coupling. Certain features of the simulation that the LBM can not handle because of its heightfield nature, as breaking waves, are detected and automatically turned into splash particles. Here we use a ballistic particle system, but our hybrid method can handle more complex systems as SPH. Both the LBM and particle systems are implemented in CUDA, although dynamic rigid bodies are simulated in CPU. We show the effectiveness of our method with various examples which achieve real-time on consumer-level hardware.Peer ReviewedPostprint (author's final draft

Low terrestrial carbon storage at the Last Glacial Maximum: constraints from multi-proxy data

Past changes in the inventory of carbon stored in vegetation and soils remain uncertain. Earlier studies inferred the increase in the land carbon inventory (Δland) between the Last Glacial Maximum (LGM) and the preindustrial period (PI) based on marine and atmospheric stable carbon isotope reconstructions, with recent estimates yielding 300–400&thinsp;GtC. Surprisingly, however, earlier studies considered a mass balance for the ocean–atmosphere–land biosphere system only. Notably, these studies neglect carbon exchange with marine sediments, weathering–burial flux imbalances, and the influence of the transient deglacial reorganization on the isotopic budgets. We show this simplification to significantly reduce Δland in simulations using the Bern3D Earth System Model of Intermediate Complexity v.2.0s. We constrain Δland to ∼850&thinsp;GtC (median estimate; 450 to 1250&thinsp;GtC ±1SD) by using reconstructed changes in atmospheric δ13C, marine δ13C, deep Pacific carbonate ion concentration, and atmospheric CO2 as observational targets in a Monte Carlo ensemble with half a million members. It is highly unlikely that the land carbon inventory was larger at LGM than PI. Sensitivities of the target variables to changes in individual deglacial carbon cycle processes are established from transient factorial simulations with the Bern3D model. These are used in the Monte Carlo ensemble and provide forcing–response relationships for future model–model and model–data comparisons. Our study demonstrates the importance of ocean–sediment interactions and burial as well as weathering fluxes involving marine organic matter to explain deglacial change and suggests a major upward revision of earlier isotope-based estimates of Δland.</p

Minichromosome maintenance proteins 2 and 5 in non-benign epithelial ovarian tumours: relationship with cell cycle regulators and prognostic implications

Minichromosome maintenance proteins (MCM) have recently emerged as novel proliferation markers with prognostic implications in several tumour types. This is the first study investigating MCM-2 and MCM-5 immunohistochemical expression in a series of ovarian adenocarcinomas and low malignant potential (LMP) tumours aiming to determine possible associations with clinicopathological parameters, the conventional proliferation index Ki-67, cell cycle regulators (p53, p27Kip1, p21WAF1 and pRb) and patients' outcome. Immunohistochemistry was applied in a series of 43 cases of ovarian LMP tumours and 85 cases of adenocarcinomas. Survival analysis was restricted to adenocarcinomas. The median MCM-2 and MCM-5 labelling indices (LIs) were significantly higher in adenocarcinomas compared to LMP tumours (P<0.0001 for both associations). In adenocarcinomas, the levels of MCM-2 and MCM-5 increased significantly with advancing tumour stage (P=0.0052 and P=0.0180, respectively), whereas both MCM-2 and MCM-5 increased significantly with increasing tumour grade (P=0.0002 and P=0.0006, respectively) and the presence of bulky residual disease (P<0.0001 in both relationships). A strong positive correlation was established between MCM-2 or MCM-5 expression level and Ki-67 LI (P<0.0001) as well as p53 protein (P=0.0038 and P=0.0500, respectively). Moreover, MCM-2 LI was inversely correlated with p27Kip−1 LI (P=0.0068). Finally, both MCM-2 and MCM-5 were associated significantly with adverse patients' outcome in both univariate (⩾20 vs >20%, P=0.0011 and ⩾25 vs <25%, P=0.0100, respectively) and multivariate (P=0.0001 and 0.0090, respectively) analysis. An adequately powered independent group of 45 patients was used in order to validate our results in univariate survival analysis. In this group, MCM-2 and MCM-5 expression retained their prognostic significance (P<0.0001 in both relationships). In conclusion, MCM-2 and MCM-5 proteins appear to be promising as prognostic markers in patients with ovarian adenocarcinomas

Global nitrous oxide budget (1980--2020)

Nitrous oxide (N2O) is a long-lived potent greenhouse gas and stratospheric ozone-depleting substance that has been accumulating in the atmosphere since the preindustrial period. The mole fraction of atmospheric N2O has increased by nearly 25 % from 270 ppb (parts per billion) in 1750 to 336 ppb in 2022, with the fastest annual growth rate since 1980 of more than 1.3 ppb yr−1 in both 2020 and 2021. According to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC AR6), the relative contribution of N2O to the total enhanced effective radiative forcing of greenhouse gases was 6.4 % for 1750–2022. As a core component of our global greenhouse gas assessments coordinated by the Global Carbon Project (GCP), our global N2O budget incorporates both natural and anthropogenic sources and sinks and accounts for the interactions between nitrogen additions and the biogeochemical processes that control N2O emissions. We use bottom-up (BU: inventory, statistical extrapolation of flux measurements, and process-based land and ocean modeling) and top-down (TD: atmospheric measurement-based inversion) approaches. We provide a comprehensive quantification of global N2O sources and sinks in 21 natural and anthropogenic categories in 18 regions between 1980 and 2020. We estimate that total annual anthropogenic N2O emissions have increased 40 % (or 1.9 Tg N yr−1) in the past 4 decades (1980–2020). Direct agricultural emissions in 2020 (3.9 Tg N yr−1, best estimate) represent the large majority of anthropogenic emissions, followed by other direct anthropogenic sources, including fossil fuel and industry, waste and wastewater, and biomass burning (2.1 Tg N yr−1), and indirect anthropogenic sources (1.3 Tg N yr−1) . For the year 2020, our best estimate of total BU emissions for natural and anthropogenic sources was 18.5 (lower–upper bounds: 10.6–27.0) Tg N yr−1, close to our TD estimate of 17.0 (16.6–17.4) Tg N yr−1. For the 2010–2019 period, the annual BU decadal-average emissions for both natural and anthropogenic sources were 18.2 (10.6–25.9) Tg N yr−1 and TD emissions were 17.4 (15.8–19.20) Tg N yr−1. The once top emitter Europe has reduced its emissions by 31 % since the 1980s, while those of emerging economies have grown, making China the top emitter since the 2010s. The observed atmospheric N2O concentrations in recent years have exceeded projected levels under all scenarios in the Coupled Model Intercomparison Project Phase 6 (CMIP6), underscoring the importance of reducing anthropogenic N2O emissions. To evaluate mitigation efforts and contribute to the Global Stocktake of the United Nations Framework Convention on Climate Change, we propose the establishment of a global network for monitoring and modeling N2O from the surface through to the stratosphere. The data presented in this work can be downloaded from https://doi.org/10.18160/RQ8P-2Z4R (Tian et al., 2023)

Reviews and syntheses: Abrupt ocean biogeochemical change under human-made climatic forcing – warming, acidification, and deoxygenation

Abrupt changes in ocean biogeochemical variables occur as a result of human-induced climate forcing as well as those which are more gradual and occur over longer timescales. These abrupt changes have not yet been identified and quantified to the same extent as the more gradual ones. We review and synthesise abrupt changes in ocean biogeochemistry under human-induced climatic forcing. We specifically address the ocean carbon and oxygen cycles because the related processes of acidification and deoxygenation provide important ecosystem hazards. Since biogeochemical cycles depend also on the physical environment, we also describe the relevant changes in warming, circulation, and sea ice. We include an overview of the reversibility or irreversibility of abrupt marine biogeochemical changes. Important implications of abrupt biogeochemical changes for ecosystems are also discussed. We conclude that there is evidence for increasing occurrence and extent of abrupt changes in ocean biogeochemistry as a consequence of rising greenhouse gas emissions

Lattice Boltzmann simulation of free-surface temperature dispersion in shallow water flows.

We develop a lattice Boltzmann method for modeling free-surface temperature dispersion in the shallow water flows. The governing equations are derived from the incompressible Navier-Stokes equations with assumptions of shallow water flows including bed frictions, eddy viscosity, wind shear stresses and Coriolis forces. The thermal effects are incorporated in the momentum equation by using a Boussinesq approximation. The dispersion of free-surface temperature is modelled by an advection-diffusion equation. Two distribution functions are used in the lattice Boltzmann method to recover the flow and temperature variables using the same lattice structure. Neither upwind discretization procedures nor Riemann problem solvers are needed in discretizing the shallow water equations. In addition, the source terms are straightforwardly included in the model without relying on well-balanced techniques to treat flux gradients and source terms. We validate the model for a class of problems with known analytical solutions and we also present numerical results for sea-surface temperature distribution in the Strait of Gibraltar

Interoperability of Free Software Packages to Analyze Functional Human Brain Data

Abstract Functional neuroimaging of the human brain using non-invasive measurement methods i

Lattice Boltzmann Methods for Shallow Water Flow Applications

We apply the lattice Boltzmann (LB) method for solving the shallow water equations with source terms such as the bed slope and bed friction. Our aim is to use a simple and accurate representation of the source terms in order to simulate practical shallow water flows without relying on upwind discretization or Riemann problem solvers. We validate the algorithm on problems where analytical solutions are available. The numerical results are in good agreement with analytical solutions. Furthermore, we test the method on a practical problem by simulating mean flow in the Strait of Gibraltar. The main focus is to examine the performance of the LB method for complex geometries with irregular bathymetry. The results demonstrate its ability to capture the main flow features