Transcriptional and Post-Transcriptional Regulation of Autophagy

Autophagy is a widely conserved process in eukaryotes that is involved in a series of physiological and pathological events, including development, immunity, neurodegenerative disease, and tumorigenesis. It is regulated by nutrient deprivation, energy stress, and other unfavorable conditions through multiple pathways. In general, autophagy is synergistically governed at the RNA and protein levels. The upstream transcription factors trigger or inhibit the expression of autophagyor lysosome-related genes to facilitate or reduce autophagy. Moreover, a significant number of noncoding RNAs (microRNA, circRNA, and lncRNA) are reported to participate in autophagy regulation. Finally, post-transcriptional modifications, such as RNA methylation, play a key role in controlling autophagy occurrence. In this review, we summarize the progress on autophagy research regarding transcriptional regulation, which will provide the foundations and directions for future studies on this self-eating process

Lattice Boltzmann study on Kelvin-Helmholtz instability: the roles of velocity and density gradients

A two-dimensional lattice Boltzmann model with 19 discrete velocities for compressible Euler equations is proposed (D2V19-LBM). The fifth-order Weighted Essentially Non-Oscillatory (5th-WENO) finite difference scheme is employed to calculate the convection term of the lattice Boltzmann equation. The validity of the model is verified by comparing simulation results of the Sod shock tube with its corresponding analytical solutions. The velocity and density gradient effects on the Kelvin-Helmholtz instability (KHI) are investigated using the proposed model. Sharp density contours are obtained in our simulations. It is found that, the linear growth rate $\gamma$ for the KHI decreases with increasing the width of velocity transition layer ${D_{v}}$ but increases with increasing the width of density transition layer ${D_{\rho}}$. After the initial transient period and before the vortex has been well formed, the linear growth rates, $\gamma_v$ and $\gamma_{\rho}$, vary with ${D_{v}}$ and ${D_{\rho}}$ approximately in the following way, $\ln\gamma_{v}=a-bD_{v}$ and $\gamma_{\rho}=c+e\ln D_{\rho} ({D_{\rho}}<{D_{\rho}^{E}})$, where $a$, $b$, $c$ and $e$ are fitting parameters and ${D_{\rho}^{E}}$ is the effective interaction width of density transition layer. When ${D_{\rho}}>{D_{\rho}^{E}}$ the linear growth rate $\gamma_{\rho}$ does not vary significantly any more. One can use the hybrid effects of velocity and density transition layers to stabilize the KHI. Our numerical simulation results are in general agreement with the analytical results [L. F. Wang, \emph{et al.}, Phys. Plasma \textbf{17}, 042103 (2010)].Comment: Accepted for publication in PR

A Categorical Clustering of Publishers for Mobile Performance Marketing

Mobile marketing is an expanding industry due to the growth of mobile devices (e.g., tablets, smartphones). In this paper, we explore a categorical approach to cluster publishers of a mobile performance market, in which payouts are only issued when there is a conversion (e.g., a sale). As a case study, we analyze recent and real-world data from a global mobile marketing company. Several experiments were held, considering a first internal evaluation stage, using training data, clustering quality metrics and computational effort. In the second stage, the best method, COBWEB algorithm, was analyzed using an external evaluation based on business metrics, computed over test data, and that allowed an identification of interesting clusters.This article is a result of the project NORTE-01-0247-FEDER- 017497, supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). This work was also supported by COMPETE: POCI-01-0145-FEDER-007043 and FCT Funda ̧ca ̃o para a Ciˆencia e Tecnologia within the Project Scope: UID/CEC/00319/2013

Mesoscale magnetism at the grain boundaries in colossal magnetoresistive films

We report the discovery of mesoscale regions with distinctive magnetic properties in epitaxial La$_{1-x}$Sr$_{x}$MnO$_{3}$ films which exhibit tunneling-like magnetoresistance across grain boundaries. By using temperature-dependent magnetic force microscopy we observe that the mesoscale regions are formed near the grain boundaries and have a different Curie temperature (up to 20 K {\it higher}) than the grain interiors. Our images provide direct evidence for previous speculations that the grain boundaries in thin films are not magnetically and electronically sharp interfaces. The size of the mesoscale regions varies with temperature and nature of the underlying defect.Comment: 4 pages of text, 4 figure

Spin wave theory for antiferromagnetic XXZ spin model on a triangle lattice in the presence of an external magnetic field

Spin wave theory is applied to a quantum antiferromagnetic XXZ model on a triangle lattice in the presence of an in-plane magnetic field. The effect of the field is found to enhance the quantum fluctuation and to reduce the sublattice magnetization at the intermediate field strength in the anisotropic case. The possible implication to the field driven quantum phase transition from a spin solid to a spin liquid is discussed.Comment: 5 pages,4 figure