Some results on preconditioned modified accelerated overrelaxation method

In this paper, we present new preconditioned modified accelerated overrelaxation (MAOR) method for solving linear systems. We compare the spectral radii of the iteration matrices of the preconditioned and the original methods. The comparison results show that the preconditioned MAOR method converges faster than the MAOR method whenever the MAOR method is convergent. Finally, we give one numerical example to confirm our theoretical results

Some results on preconditioned modified accelerated overrelaxation method

In this paper, we present new preconditioned modified accelerated overrelaxation (MAOR) method for solving linear systems. We compare the spectral radii of the iteration matrices of the preconditioned and the original methods. The comparison results show that the preconditioned MAOR method converges faster than the MAOR method whenever the MAOR method is convergent. Finally, we give one numerical example to confirm our theoretical results

Identification of metabolism pathways directly regulated by sigma54 factor in Bacillus thuringiensis

Sigma54 (σ54) normally regulates nitrogen and carbon utilization in bacteria. Promoters that are σ54-dependent are highly conserved and contain short sequences located at the −24 and −12 positions upstream of the transcription initiation site. σ54 requires regulatory proteins known as bacterial enhancer-binding proteins (bEBPs) to activate gene transcription. We show that σ54 regulates the capacity to grow on various nitrogen sources using a Bacillus thuringiensis HD73 mutant lacking the sigL gene encoding σ54 (ΔsigL). A 2-fold-change cutoff and a false discovery rate cutoff of P < 0.05 were used to analyze the DNA microarray data, which revealed 255 genes that were downregulated and 121 that were upregulated in the ΔsigL mutant relative to the wild-type HD73 strain. The σ54 regulon (stationary phase) was characterized by DNA microarray, bioinformatics, and functional assay; 16 operons containing 47 genes were identified whose promoter regions contain the conserved −12/−24 element and whose transcriptional activities were abolished or reduced in the ΔsigL mutant. Eight σ54-dependent transcriptional bEBPs were found in the Bt HD73 genome, and they regulated night σ54-dependent promoters.The metabolic pathways activated by σ54 in this process have yet to be identified in Bacillus thuringiensis; nonetheless, the present analysis of the σ54 regulon provides a better understanding of the physiological roles of σ factors in bacteria

Graph Fuzzy System: Concepts, Models and Algorithms

Fuzzy systems (FSs) have enjoyed wide applications in various fields, including pattern recognition, intelligent control, data mining and bioinformatics, which is attributed to the strong interpretation and learning ability. In traditional application scenarios, FSs are mainly applied to model Euclidean space data and cannot be used to handle graph data of non-Euclidean structure in nature, such as social networks and traffic route maps. Therefore, development of FS modeling method that is suitable for graph data and can retain the advantages of traditional FSs is an important research. To meet this challenge, a new type of FS for graph data modeling called Graph Fuzzy System (GFS) is proposed in this paper, where the concepts, modeling framework and construction algorithms are systematically developed. First, GFS related concepts, including graph fuzzy rule base, graph fuzzy sets and graph consequent processing unit (GCPU), are defined. A GFS modeling framework is then constructed and the antecedents and consequents of the GFS are presented and analyzed. Finally, a learning framework of GFS is proposed, in which a kernel K-prototype graph clustering (K2PGC) is proposed to develop the construction algorithm for the GFS antecedent generation, and then based on graph neural network (GNNs), consequent parameters learning algorithm is proposed for GFS. Specifically, three different versions of the GFS implementation algorithm are developed for comprehensive evaluations with experiments on various benchmark graph classification datasets. The results demonstrate that the proposed GFS inherits the advantages of both existing mainstream GNNs methods and conventional FSs methods while achieving better performance than the counterparts.Comment: This paper has been submitted to a journa

Multiple Factors Drive Variation of Forest Root Biomass in Southwestern China

The roots linking the above-ground organs and soil are key components for estimating net primary productivity and carbon sequestration of forests. The patterns and drivers of root biomass in forest have not been examined well at the regional scale, especially for the widely distributed forest ecosystems in southwestern China. We attempted to determine the spatial patterns of root biomass (RB, Mg/ha), annual increment root biomass (AIRB, Mg/ha/year), ratio of root and above-ground (RRA), and the relative contributions of abiotic and biotic factors that drive the variation of root biomass. Forest biomass and multiple factors (climate, soil, forest types, and stand characteristics) of 318 plots in this region (790,000 km2) were analyzed in this research. The AB (the mean values for forest aboveground biomass per ha, Mg/ha), RB, AIRB, and RRA were 126 Mg/ha, 28 Mg/ha, 0.69 Mg/ha and 0.22, respectively. AB, RB, AIRB, and RRA varied across all the plots and forest types. Both RB and AIRB showed significant spatial patterns of distribution, while RRA did not show any spatial patterns of distribution. Up to 28.4% of variation in total of RB, AIRB, and RRA can be attributed to the climate, soil, and stand characteristics. The explained or contribution rates of climate, soil, and stand characteristics for variation of whole forest root biomass were 6.7%, 16.9%, and 10.9%, respectively. Path analysis in structural equation model (SEM) indicated the direct influence of stand age on RB. AIRB was greater than that of the other factors. Climate, soil and stand characteristics in different forest types could explain 9.7%–96.1%, 15.4%–96.4%, and 36.7%–99.4% of variations in RB, AIRB, and RRA, respectively, which suggests that the multiple factors may be important in explaining the variations in forest root biomass. The results of the analysis of root biomass per ha, annual increment of root biomass per ha, and ratio of root and above-ground in the seven forest types categorized by climate, soil, and stand characteristics may be used for accurately determining C sequestration by the forest root and estimating forest biomass in this region

Cry78Aa, a novel Bacillus thuringiensis insecticidal protein with activity against Laodelphax striatellus and Nilaparvata lugens

Transgenic plants expressing insecticidal proteins originating from Bacillus thuringiensis (Bt) have successfully been used to control lepidopteran and coleopteran pests with chewing mouthparts. However, only a handful of Bt proteins have been identified that have bioactivity against sap sucking pests (Hemiptera), including aphids, whiteflies, plant bugs and planthoppers. A novel Bt insecticidal protein with significant toxicity against a hemipteran insect pest is described here. The gene encoding the 359 amino acid, 40.7 kDa protein was cloned from strain C9F1. After expression and purification of the toxin, its median lethal concentration (LC) values against Laodelphax striatellus and Nilaparvata lugens were determined as 6.89 μg/mL and 15.78 μg/mL respectively. Analysis of the toxin sequence revealed the presence of both Toxin_10 and Ricin_B_Lectin domains

The coordinated roles of miR-26a and miR-30c in regulating TGFβ1-induced epithelial-to-mesenchymal transition in diabetic nephropathy

MicroRNAs (miRNAs) play vital roles in the development of diabetic nephropathy. Here, we compared the protective efficacies of miR-26a and miR-30c in renal tubular epithelial cells (NRK-52E) and determined whether they demonstrated additive effects in the attenuation of renal fibrosis. TGFβ1 suppressed miR-26a and miR-30c expression but up-regulated pro-fibrotic markers in NRK-52E cells, and these changes were also found in the kidney cortex of 40-week-old diabetic Otsuka Long-Evans Tokushima fatty (OLETF) rats. Bioinformatic analyses and luciferase assays further demonstrated that both miR-26a and miR-30c targeted connective tissue growth factor (CTGF); additionally, Snail family zinc finger 1 (Snail1), a potent epithelial-to-mesenchymal transition (EMT) inducer, was targeted by miR-30c. Overexpression of miR-26a and miR-30c coordinately decreased CTGF protein levels and subsequently ameliorated TGFβ1-induced EMT in NRK-52E cells. Co-silencing of miR-26a and miR-30c exhibited the opposite effect. Moreover, miR-26a and miR-30c co-silenced CTGF to decrease ERK1/2 and p38 MAPK activation. Furthermore, miR-26a was up-regulated in urinary extracellular vesicles of diabetic nephropathy patients. Our study provides evidence for the cooperative roles of miR-26a and miR-30c in the pathogenesis of diabetic nephropathy, and the co-targeting of miR-26a and miR-30c could provide a new direction for diabetic nephropathy treatment

Tripping Friction Model for Multi-Stage Fracturing and Completion String in Horizontal Well

The structure of multi-stage fracturing completion string in horizontal well is complicated. The downhole tools such as packers and sliding sleeves whose dimensions are very close to the size of the borehole, and the completion string has strong stiffness as well. Thus, it leads to larger frictional restriction when running string. Based on the above reasons, it is essential to calculate the tripping capacity before the strings running into the well in case of sticking off. However, calculation errors of conventional string tripping models are relatively larger. This paper took the structure of multi-stage fracturing completion string into consideration, divided completion string by contact points between string and borehole to establish the stress and bending model of the string between two contact points, and established the tripping friction and hookload model for multi-stage fracturing completion string. An applied example of multi-stage fracturing horizontal well in Hong 90-1 block of Jilin Oil Field shows that the created model in the paper is more accurate. The accuracy of hookload while the string running in form curved section to bottom is 95.80%. The established model is more accurate and reliable. It can be used to estimate the tripping ability of the multi-stage fracturing completion string.Key words: Multistage fracturing; Tripping; Tripping friction; Mechanical mode