Drip and Mate Operations Acting in Test Tube Systems and Tissue-like P systems

The operations drip and mate considered in (mem)brane computing resemble the operations cut and recombination well known from DNA computing. We here consider sets of vesicles with multisets of objects on their outside membrane interacting by drip and mate in two different setups: in test tube systems, the vesicles may pass from one tube to another one provided they fulfill specific constraints; in tissue-like P systems, the vesicles are immediately passed to specified cells after having undergone a drip or mate operation. In both variants, computational completeness can be obtained, yet with different constraints for the drip and mate operations

Equilibrium orbit analysis in a free-electron laser with a coaxial wiggler

An analysis of single-electron orbits in combined coaxial wiggler and axial guide magnetic fields is presented. Solutions of the equations of motion are developed in a form convenient for computing orbital velocity components and trajectories in the radially dependent wiggler. Simple analytical solutions are obtained in the radially-uniform-wiggler approximation and a formula for the derivative of the axial velocity $v_{\|}$ with respect to Lorentz factor $\gamma$ is derived. Results of numerical computations are presented and the characteristics of the equilibrium orbits are discussed. The third spatial harmonic of the coaxial wiggler field gives rise to group $III$ orbits which are characterized by a strong negative mass regime.Comment: 13 pages, 9 figures, to appear in phys. rev.

Diffractive Vector Meson Photoproduction from Dual String Theory

We study diffractive vector meson photoproduction using string theory via AdS/CFT. The large $s$ behavior of the cross sections for the scattering of the vector meson $V$ on a proton is dominated by the soft Pomeron, $\sigma_V\sim s^{2\epsilon-2\alpha'_P/B}$, where from the string theory model of \cite{nastase2}, $\epsilon$ is approximately 1/7 below 10 GeV, and 1/11 for higher, but still sub-Froissart, energies. This is due to the production of black holes in the dual gravity. In $\phi$-photoproduction the mesonic Regge poles do not contribute, so that we deal with a pure Pomeron contribution. This allows for an experimental test. At the gauge theory "Planck scale" of about 1-2 GeV, the ratios of the soft Pomeron contributions to the photoproduction cross-sections of different vector mesons involve not only the obvious quark model factors, but also the Boltzmann factors $e^{-4 M_V/T_0}$, with $T_0$ the temperature of the dual black hole. The presence of these factors is confirmed in the experimental data for $\rho, \omega, \phi, J/\psi,$ and $\psi(2S)$ photoproduction and is compatible with the meager $\Upsilon$ photoproduction data. Throughout, we use vector meson dominance, and from the data we obtain $T_0$ of about $1.3 GeV$, i.e. the gauge theory "Planck scale," as expected. The ratio of the experimental soft Pomeron onset scale $\hat{E}_R\sim 9$ GeV and of the gauge theory Planck scale, $T_0 \sim 1.3$ GeV conforms to the theoretical prediction of $N_c^2/N_c^{1/4}$.Comment: 17 pages, 1 figure, late

Frictional sliding without geometrical reflection symmetry

The dynamics of frictional interfaces play an important role in many physical systems spanning a broad range of scales. It is well-known that frictional interfaces separating two dissimilar materials couple interfacial slip and normal stress variations, a coupling that has major implications on their stability, failure mechanism and rupture directionality. In contrast, interfaces separating identical materials are traditionally assumed not to feature such a coupling due to symmetry considerations. We show, combining theory and experiments, that interfaces which separate bodies made of macroscopically identical materials, but lack geometrical reflection symmetry, generically feature such a coupling. We discuss two applications of this novel feature. First, we show that it accounts for a distinct, and previously unexplained, experimentally observed weakening effect in frictional cracks. Second, we demonstrate that it can destabilize frictional sliding which is otherwise stable. The emerging framework is expected to find applications in a broad range of systems.Comment: 14 pages, 5 figures + Supplementary Material. Minor change in the title, extended analysis in the second par

Analysis and optimization of a free-electron laser with an irregular waveguide

Using a time-dependent approach the analysis and optimization of a planar FEL-amplifier with an axial magnetic field and an irregular waveguide is performed. By applying methods of nonlinear dynamics three-dimensional equations of motion and the excitation equation are partly integrated in an analytical way. As a result, a self-consistent reduced model of the FEL is built in special phase space. The reduced model is the generalization of the Colson-Bonifacio model and takes into account the intricate dynamics of electrons in the pump magnetic field and the intramode scattering in the irregular waveguide. The reduced model and concepts of evolutionary computation are used to find optimal waveguide profiles. The numerical simulation of the original non-simplified model is performed to check the effectiveness of found optimal profiles. The FEL parameters are chosen to be close to the parameters of the experiment (S. Cheng et al. IEEE Trans. Plasma Sci. 1996, vol. 24, p. 750), in which a sheet electron beam with the moderate thickness interacts with the TE01 mode of a rectangular waveguide. The results strongly indicate that one can improve the efficiency by a factor of five or six if the FEL operates in the magnetoresonance regime and if the irregular waveguide with the optimized profile is used

How to detect level crossings without looking at the spectrum

We remind the reader that it is possible to tell if two or more eigenvalues of a matrix are equal, without calculating the eigenvalues. We then use this property to detect (avoided) crossings in the spectra of quantum Hamiltonians representable by matrices. This approach provides a pedagogical introduction to (avoided) crossings, is capable of handling realistic Hamiltonians analytically, and offers a way to visualize crossings which is sometimes superior to that provided by the spectrum. We illustrate the method using the Breit-Rabi Hamiltonian to describe the hyperfine-Zeeman structure of the ground state hydrogen atom in a uniform magnetic field.Comment: Accepted for publication in the American Journal of Physic

Superevolution

Usually, in supersymmetric theories, it is assumed that the time-evolution of states is determined by the Hamiltonian, through the Schr\"odinger equation. Here we explore the superevolution of states in superspace, in which the supercharges are the principal operators. The superevolution equation is consistent with the Schr\"odinger equation, but it avoids the usual degeneracy between bosonic and fermionic states. We discuss superevolution in supersymmetric quantum mechanics and in a simple supersymmetric field theory.Comment: 23 page

A representation formula for maps on supermanifolds

In this paper we analyze the notion of morphisms of rings of superfunctions which is the basic concept underlying the definition of supermanifolds as ringed spaces (i.e. following Berezin, Leites, Manin, etc.). We establish a representation formula for all morphisms from the algebra of functions on an ordinary manifolds to the superalgebra of functions on an open subset of R^{p|q}. We then derive two consequences of this result. The first one is that we can integrate the data associated with a morphism in order to get a (non unique) map defined on an ordinary space (and uniqueness can achieved by restriction to a scheme). The second one is a simple and intuitive recipe to compute pull-back images of a function on a manifold by a map defined on a superspace.Comment: 23 page

Velocity Fluctuations in Dynamical Fracture: the Role of Microcracks

We address the velocity fluctuations of fastly moving cracks in stressed materials. One possible mechanism for such fluctuations is the interaction of the main crack with micro cracks (irrespective whether these are existing material defects or they form during the crack evolution). We analyze carefully the dynamics (in 2 space dimensions) of one macro and one micro crack, and demonstrate that their interaction results in a {\em large} and {\em rapid} velocity fluctuation, in qualitative correspondence with typical velocity fluctuations observed in experiments. In developing the theory of the dynamical interaction we invoke an approximation that affords a reduction in mathematical complexity to a simple set of ordinary differential equations for the positions of the cracks tips; we propose that this kind of approximation has a range of usefulness that exceeds the present context.Comment: 7 pages, 7 figure

Free-Boundary Dynamics in Elasto-plastic Amorphous Solids: The Circular Hole Problem

We develop an athermal shear-transformation-zone (STZ) theory of plastic deformation in spatially inhomogeneous, amorphous solids. Our ultimate goal is to describe the dynamics of the boundaries of voids or cracks in such systems when they are subjected to remote, time-dependent tractions. The theory is illustrated here for the case of a circular hole in an infinite two-dimensional plate, a highly symmetric situation that allows us to solve much of the problem analytically. In spite of its special symmetry, this example contains many general features of systems in which stress is concentrated near free boundaries and deforms them irreversibly. We depart from conventional treatments of such problems in two ways. First, the STZ analysis allows us to keep track of spatially heterogeneous, internal state variables such as the effective disorder temperature, which determines plastic response to subsequent loading. Second, we subject the system to stress pulses of finite duration, and therefore are able to observe elasto-plastic response during both loading and unloading. We compute the final deformations and residual stresses produced by these stress pulses. Looking toward more general applications of these results, we examine the possibility of constructing a boundary-layer theory that might be useful in less symmetric situations.Comment: 30 pages (preprint format), 9 figure