Sex and outcrossing in a sessile freshwater invertebrate

SUMMARY1. The freshwater bryozoan Cristatella mucedo, in common with other sessile, benthic freshwater taxa, has an unusual life history: sex occurs during a relatively brief period near the start of the growing season, and overwintering occurs in the form of asexually produced dormant propagules (statoblasts). Consistent observed heterozygosity (Ho) deficits in C. mucedo populations have previously suggested that inbreeding is common, although a possible contribution of a Wahlund effect to low Ho could not be discounted. 2. We have used microsatellite data in the first study based on codominant markers to genetically characterise maternal colonies and larval offspring of C. mucedo. The 'population' represented by the larvae was in Hardy–Weinberg equilibrium, which has previously been found in only one of 39 populations of C. mucedo. At least 64% of larvae were the products of outcrossing. We suggest that the unusual early timing of sex may be a strategy to maximise rates of outcrossing within populations of sessile freshwater invertebrate

Typha (Cattail) Invasion in North American Wetlands: Biology, Regional Problems, Impacts, Ecosystem Services, and Management

Typha is an iconic wetland plant found worldwide. Hybridization and anthropogenic disturbances have resulted in large increases in Typha abundance in wetland ecosystems throughout North America at a cost to native floral and faunal biodiversity. As demonstrated by three regional case studies, Typha is capable of rapidly colonizing habitats and forming monodominant vegetation stands due to traits such as robust size, rapid growth rate, and rhizomatic expansion. Increased nutrient inputs into wetlands and altered hydrologic regimes are among the principal anthropogenic drivers of Typha invasion. Typha is associated with a wide range of negative ecological impacts to wetland and agricultural systems, but also is linked with a variety of ecosystem services such as bioremediation and provisioning of biomass, as well as an assortment of traditional cultural uses. Numerous physical, chemical, and hydrologic control methods are used to manage invasive Typha, but results are inconsistent and multiple methods and repeated treatments often are required. While this review focuses on invasive Typha in North America, the literature cited comes from research on Typha and other invasive species from around the world. As such, many of the underlying concepts in this review are relevant to invasive species in other wetland ecosystems worldwide

The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA (eDNA)

Environmental DNA (eDNA) comprises DNA fragments that have been shed into the environment by organisms, and which can be extracted from environmental samples such as water or soil. Characterization of eDNA can allow researchers to infer the presence or absence of species from a particular site without the need to locate and identify individuals, and therefore may provide an extremely valuable tool for quantifying biodiversity. However, as is often the case with relatively new protocols, methodological challenges remain. A number of earlier reviews have discussed these challenges, but none have provided extensive treatment of the critical decisions surrounding molecular markers and primer development for use in eDNA assays. This review discusses a number of options and approaches that can be used when determining which primers and gene regions are most appropriate for either targeted species detection or metabarcoding macro-organisms from eDNA. The latter represents a new field that is growing rapidly, and which has the potential to revolutionize future assessments of community and ecosystem diversity.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Dispersal in freshwater invertebrates

Movement between discrete habitat patches can present significant challenges to organisms. Freshwater invertebrates achieve dispersal using a variety of mechanisms that can be broadly categorized as active or passive, and which have important consequences for processes of colonization, gene flow, and evolutionary divergence. Apart from flight in adult freshwater insects, active dispersal appears relatively uncommon. Passive dispersal may occur through transport by animal vectors or wind, often involving a specific desiccation-resistant stage in the life cycle. Dispersal in freshwater taxa is difficult to study directly, and rare but biologically significant dispersal events may remain undetected. Increased use of molecular markers has provided considerable insight into the frequency of dispersal in freshwater invertebrates, particularly for groups such as crustaceans and bryozoans that disperse passively through the transport of desiccation-resistant propagules. The establishment of propagule banks in sediment promotes dispersal in time and may be particularly important for passive dispersers by allowing temporal escape from unfavorable conditions. Patterns that apply to dispersal in freshwater invertebrates can be readily extended to other freshwater taxa, since common challenges arise from the colonization of isolated aquatic systems

Genetic changes within freshwater bryozoan populations suggest temporal gene flow from statoblast banks

Temporal changes in the genetic structure of populations of the freshwater bryozoan Cristatella mucedo were investigated by genotyping colonies at five microsatellite loci. Colonies were collected from five different locations over time periods ranging from 1 month to 5 yr. Our findings identified substantial within-site genetic changes, both within and between years, that were not consistent with variation produced by sexual reproduction. There was a general trend toward a decrease in genetic diversity throughout the growing season, possibly due to clonal selection. In addition, 18 out of 21 within-site comparisons showed a significant difference in the allele frequencies at one or more loci. Two of the populations revealed identical clones in >1 yr. At one site, an apparent population crash occurred in 1993; nevertheless, numerous clones were present in 1994 and 1995, including two multilocus genotypes that were present at the same site in 1992. Since the populations from before and after the bottleneck remained genetically similar, the most plausible source of these clones is reintroduction from a statoblast bank rather than through introductions from other genetically distinct populations. These findings, in conjunction with earlier studies, indicate that propagule banks influence the population dynamics of a wide range of freshwater invertebrates in a number of ways, including the enhancement of within-population genetic diversity and a decreased likelihood of local extinctions

Successful amplification of rice chloroplast microsatellites from century-old grass samples from the Park Grass Experiment

We report the successful amplification of microsatellite markers for the chloroplast genome from century-old samples of 2 grasses growing in the Park Grass Experiment (PGE): Anthoxanthum ordoratum and Festuca rubra. This opens the possibility of establishing a long-term genetic time series for the PGE, which began in 1856 and is believed to be the oldest ecological experiment in existence. Although the plant samples used were not originally prepared or stored with molecular analysis in mind, the hexadecyltrimethylammonium bromide (CTAB) method of DNA extraction was successfully used. Obtained DNA was degraded but could be amplified by means of PCR. It produced bands around the expected size for chloroplast microsatellite primers derived from rice. When sequenced, bands showed good homology with sequences from rice chloroplast genomes listed in GenBank (accession No X15901)

Applications and Implications of Neutral versus Non-neutral Markers in Molecular Ecology

The field of molecular ecology has expanded enormously in the past two decades, largely because of the growing ease with which neutral molecular genetic data can be obtained from virtually any taxonomic group. However, there is also a growing awareness that neutral molecular data can provide only partial insight into parameters such as genetic diversity, local adaptation, evolutionary potential, effective population size, and taxonomic designations. Here we review some of the applications of neutral versus adaptive markers in molecular ecology, discuss some of the advantages that can be obtained by supplementing studies of molecular ecology with data from non-neutral molecular markers, and summarize new methods that are enabling researchers to generate data from genes that are under selection

Development of species-specific primers with potential for amplifying eDNA from imperilled freshwater unionid mussels

Environmental DNA (eDNA) is emerging as a potentially powerful tool for inferring speciesâ presence, and hence occupancy, from DNA that is shed into environmental samples such as water. Although eDNA screening has been used to detect DNA from a variety of taxonomic groups, it has not yet been used to identify DNA from species with numerous potentially sympatric confamilial species, a situation that may preclude the development of species-specific markers. There are 41 native freshwater mussel species (Unionidae) in Ontario, Canada. Many of these are potentially sympatric, and 14 species have been formally assessed as endangered, threatened, or special concern. We investigated whether there was sufficient variation within the cytochrome oxidase region (COI) to develop species-specific eDNA markers for at-risk unionids. We developed 32 COI markers for eight unionid species, and tested each of these on the target species plus 29 potentially sympatric unionid taxa. Six of these markers amplified DNA only from the intended target species. We then extracted and amplified mussel eDNA from rearing-tank water samples. We conclude that despite high species diversity, it should be possible to develop eDNA COI markers and screen water samples for habitat occupancy by unionid mussels.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Repetitive flanking sequences (ReFS): novel molecular markers from microsatellite families

Although microsatellite markers have become exceedingly popular in molecular studies of wild organisms, their development in some taxonomic groups is challenging. This is partly because of repetitive flanking sequences, which lead to the simultaneous amplification of alleles from multiple loci. Until now, these microsatellite DNA families have been considered unsuitable for population genetics studies, but here we describe our development of these repetitive flanking sequences (ReFS) as novel molecular markers. We illustrate the utility of these markers by using them to address an outstanding taxonomic question in the moth genus Schrankia