4 research outputs found
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
- Author
- Abecasis G.R.
- Abyzov A.
- Albers C.A.
- Albrecht M.W.
- Alkan C.
- Altshuler D.M.
- Amstislavskiy V.S.
- Ananiev V.
- Anderson P.
- Angius A.
- Auton A.
- Awadalla P.
- Ayub Q.
- Bafna V.
- Bainbridge M.
- Balasubramaniam S.
- Balasubramanian S.
- Ball E.V.
- Banks E.
- Baran Y.
- Barker J.
- Barnes B.
- Barnes K.C.
- Batzer M.A.
- Bauer M.
- Beal K.
- Bedoya G.
- Belaia Z.
- Beloslyudtsev D.
- Bentley D.R.
- Bhatia G.
- Bigham A.
- Blackburne B.
- Blackwell T.
- Bodmer W.
- Borodina T.A.
- Bouk N.
- Brooks L.D.
- Browning B.L.
- Burchard E.G.
- Burton J.
- Busonero F.
- Bustamante C.D.
- Byrnes J.K.
- Cai H.
- Cai Z.
- Cao H.
- Carneiro M.O.
- Chakravarti A.
- Challis D.
- Cheetham R.K.
- Chen J.
- Chen C.
- Chen K.
- Chen Y.
- Chinwalla A.
- Chris T.-S.
- Christoforides A.
- Church D.
- Churchhouse C.
- Clark A.G.
- Clarke L.
- Clarke D.
- Clemm N.C.
- Coffey A.J.
- Cohen R.
- Colonna V.
- Cook C.
- Cooper D.N.
- Cox T.
- Craig D.W.
- Cucca F.
- Cunningham F.
- Daly M.J.
- Danecek P.
- Davies C.J.
- De LaVega F.M.
- Degenhardt J.
- Del Angel G.
- Delaneau O.
- DePristo M.A.
- Dermitzakis E.T.
- Devine S.E.
- Ding L.
- Dinh H.
- Donnelly P.
- Dooling D.
- Duncanson A.
- Dunn M.
- Durbin R.M.
- Dutil J.
- Eberle M.
- Eichler E.E.
- Evani U.S.
- Fang L.
- Fang X.
- Felsenfeld A.L.
- Flicek P.
- Fowler G.
- Frankish A.
- Fu Y.
- Fu Y.
- Fuchsberger C.
- Fulton L.
- Fulton R.
- Gabriel S.B.
- Garcia-Montero A.
- Garner J.
- Garrison E.P.
- Genovese G.
- Gerry N.
- Gerstein M.B.
- Gharani N.
- Gibbs R.A.
- Gignoux C.R.
- Gollub J.
- Gottipati S.
- Gravel S.
- Green E.D.
- Griffin L.
- Grocock R.
- Grossman S.R.
- Guo X.
- Gupta N.
- Gupta-Hinch A.
- Guyer M.S.
- Habegger L.
- Hajirasouliha I.
- Hale W.
- Halperin E.
- Handsaker R.E.
- Harmanci A.O.
- Harrow J.
- Hartl C.
- Haussler D.
- Hefferon T.
- Henn B.
- Hernandez R.D.
- Herrero J.
- Herwig S.R.
- Hodgkinson A.
- Homer N.
- Hormozdiari F.
- Howie B.
- Hsieh C.-H.
- Huang N.
- Humphray S.
- Hurles M.E.
- Iqbal Z.
- Izatt T.
- James T.
- Jian M.
- Jiang H.
- Jin H.
- Jin X.
- Jin M.
- Jones C.
- Jones D.
- Jorde L.
- Jostins L.
- Jun G.
- Kahn S.
- Kalra D.
- Kang H.M.
- Katzman S.J.
- Kaye J.S.
- Keane T.M.
- Keinan A.
- Kelman G.
- Kenny E.E.
- Kent W.J.
- Kent A.
- Kerasidou A.
- Khurana E.
- Kidd J.M.
- Kim W.
- Kim K.C.
- Kimelman M.
- Kingsbury Z.
- Knoppers B.M.
- Ko A.
- Koboldt D.C.
- Kolb-Kokocinski A.
- Konkel M.K.
- Korbel J.O.
- Kovar C.
- Kulesha E.
- Kural D.
- Kurdoglu A.A.
- Lachlan H.
- Lacroute P.
- Lander E.S.
- Lappalainen T.
- Lee W.-P.
- Lee C.
- Lee S.
- Lehrach H.
- Leinonen R.
- Lek M.
- Leong W.F.
- Lewis L.
- Li G.
- Li H.
- Li J.
- Li Q.
- Li Y.
- Li Y.
- Li Z.
- Lienhard M.
- Lihm J.
- Lin H.
- Lindsay S.J.
- Liu X.
- Liu X.
- Liu X.
- Liu B.
- Liu C.
- Lopez J.
- Lu J.
- Lu Y.
- Lunter G.
- Luo R.
- Lyons R.
- Ma X.
- MacArthur D.G.
- Makarov V.
- Maples B.K.
- Marchini J.
- Marchini J.L.
- Mardis E.R.
- Maroo A.
- Marth G.T.
- Martinez-Cruzado J.C.
- Maschio A.
- Mathias R.
- Mathieson I.
- McCarroll S.A.
- McCarthy S.
- McEwen J.E.
- McLaren W.M.
- McLellan M.D.
- McVeanh G.A.
- Meric P.
- Mertes F.
- Michaelson J.J.
- Michelson L.P.
- Mills R.E.
- Moreno-Estrada A.
- Mu X.J.
- Murray L.
- Muzny D.
- Myers S.
- Nagaswamy U.
- Nemesh J.C.
- Nickerson D.A.
- Ning Z.
- Oleksyk T.K.
- Orfao A.
- Ossorio P.N.
- Ostapchuk Y.
- OSullivan C.
- Parker M.
- Peltonen L.
- Peterson J.L.
- Phan L.
- Ponomarov S.
- Poplin R.E.
- Porcu E.
- Quail M.
- Radhakrishnan R.
- Rausch T.
- Reich D.
- Reid J.
- Reinier F.
- Rimmer A.
- Ritchie G.R.S.
- Roa A.
- Rodriguez-Flores J.L.
- Rosenfeld J.A.
- Rotimi C.N.
- Royal C.D.
- Ruiz-Linares A.
- Sabeti P.C.
- Sabo A.
- Sandoval K.
- Sanna S.
- Scally A.
- Schaffner S.F.
- Schlessinger D.
- Schmidt J.P.
- Schneider V.
- Sebat J.
- Shakir K.
- Shao H.
- Shaw R.
- Shekhtman E.
- Sherry S.T.
- Shi X.
- Shriver M.D.
- Sidore C.
- Sinari S.A.
- Sirotkin K.
- Sisu C.
- Slotta D.
- Smirnov D.
- Smith R.E.
- Squire K.
- Stalker J.
- Stenson P.D.
- Streeter I.
- Sttz A.M.
- Su Y.
- Sudbrak R.
- Sudmant P.H.
- Sultan M.
- Tabrizi S.
- Tai S.
- Tallon L.J.
- Tan A.
- Tang M.
- Tariyal R.
- Tian Z.
- Timmermann B.
- Tishkoff S.
- Toji L.H.
- Toneva I.
- Trost M.K.
- Via M.
- Von Grotthuss M.
- Walker J.A.
- Wallis J.W.
- Walter K.
- Wang G.
- Wang J.
- Wang J.
- Wang B.
- Wang B.
- Wang M.
- Wang Y.
- Ward A.N.
- Webster T.
- Weinstock G.M.
- Wendl M.C.
- Wilson R.K.
- Witherspoon D.
- Wong B.
- Wu H.
- Wu J.
- Wu R.
- Xiao C.
- Xie Y.
- Xifara D.K.
- Xing J.
- Xiong M.
- Xue Y.
- Yang G.
- Yang H.
- Yang L.
- Yaspo M.L.
- Ye C.
- Ye K.
- Ye K.
- Yin Y.
- Yoon S.C.
- You C.J.
- Yu F.
- Yu J.
- Yu C.
- Zakharia F.
- Zhan Y.
- Zhang H.
- Zhang Q.
- Zhang W.
- Zhang C.
- Zhang M.
- Zhang Y.
- Zhao J.
- Zhao M.
- Zheng H.
- Zheng X.
- Zheng-Bradley X.
- Zhu H.
- Zhu J.
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2014
- Field of study
A major use of the 1000 Genomes Project (1000GP) data is genotype imputation in genome-wide association studies (GWAS). Here we develop a method to estimate haplotypes from low-coverage sequencing data that can take advantage of single-nucleotide polymorphism (SNP) microarray genotypes on the same samples. First the SNP array data are phased to build a backbone (or 'scaffold') of haplotypes across each chromosome. We then phase the sequence data 'onto' this haplotype scaffold. This approach can take advantage of relatedness between sequenced and non-sequenced samples to improve accuracy. We use this method to create a new 1000GP haplotype reference set for use by the human genetic community. Using a set of validation genotypes at SNP and bi-allelic indels we show that these haplotypes have lower genotype discordance and improved imputation performance into downstream GWAS samples, especially at low-frequency variants. © 2014 Macmillan Publishers Limited. All rights reserved
Streptococcus milleri pulmonary disease: a review and clinical description of 25 patients.
- Author
- Benfield G.F.A.
- Berger H.A.
- Bouros D.
- C A Wong
- Colman G.
- Coykendall A.L.
- der Auwera P Van
- F Donald
- Facklam R.R.
- Facklam R.R.
- Frankish P.D.
- Gossling J.
- Hocken D.B.
- J T Macfarlane
- Marshall R.
- Moores D.W.O.
- Murray H.W.
- Poole P.M.
- Ruoff K.L.
- Shinzato T.
- Shinzato T.
- Singh K.P.
- Steffen E.K.
- Strange C.
- Taylor R.F.H.
- Th Ferber
- Unsworth P.F.
- Waitkins S.A.
- Whiley R.A.
- Whiley R.A.
- WJ Jr, Roy
- Publication venue
- 'BMJ'
- Publication date
- Field of study
In Sickness and In Health: Interpersonal Risk and Resilience in Cardiovascular Disease
- Author
- A. Bandura
- A. Bengtson
- A. Caspi
- A. Fuentes
- A. Haukkala
- A. Perski
- A. Rozanski
- A. Rozanski
- A.A. Duits
- A.F. Abraido-Lanza
- A.F. Abraido-Lanza
- A.L. Gruber-Baldini
- A.L. Pincus
- A.M. Fontana
- A.P. Nieboer
- A.S. Clarke
- A.W. Siegman
- American Heart Association
- B. Baker
- B. Han
- B. Major
- B.B. Gump
- B.J. Riegel
- B.K. Houston
- B.N. Uchino
- B.N. Uchino
- B.R. Karney
- C. Nijboer
- C.A. Surra
- C.C. Gruter
- C.E. Rusbult
- C.J. Frankish
- C.K. Ewart
- C.L. Coe
- C.M. Dickens
- C.S. Carter
- C.S. Carter
- C.S. Carter
- C.S. Carver
- C.S. Carver
- C.T. Snowdon
- C.W. Given
- C.Y. Fang
- D. Bakan
- D. Liu
- D. Reed
- D. Sheffield
- D. Uno
- D.A. Gust
- D.E. Bush
- D.E. Clarke
- D.G. Dyck
- D.H. Abbott
- D.J. Kiesler
- D.J. Kiesler
- D.J. Kiesler
- D.J. Kiesler
- D.J. Kors
- D.K. Moser
- D.L. Castles
- D.L. Hoyert
- D.W. Johnson
- E. Brondolo
- E. Friedmann
- E. Soderman
- E.C. Pinel
- E.C. Pinel
- E.C. Suarez
- E.D. Eaker
- E.K. Beach
- F.B. Waal de
- G. Zunkel
- G.A. Hilbert
- G.A. Kaplan
- G.A. Kaplan
- G.A. Kaplan
- G.W. Allport
- H. Ben-Zur
- H.H. Kelley
- H.L. Fritz
- H.S. Sullivan
- I. Kawachi
- I. Kawachi
- I. Wicklund
- J. Blascovich
- J. Blascovich
- J. Bookwala
- J. Dewey
- J. Orford
- J. Schnittker
- J. Suls
- J. Tuinstra
- J.A. Kulik
- J.A. Kulik
- J.A. Schmidt
- J.A. Schmidt
- J.B. Nealey
- J.B. Silk
- J.C. Coyne
- J.C. Coyne
- J.C. Coyne
- J.C. Coyne
- J.C. Coyne
- J.C. Coyne
- J.C. Coyne
- J.C. O’Shea
- J.D. Vess Jr
- J.H. Manson
- J.K. Kiecolt-Glaser
- J.K. Kiecolt-Glaser
- J.K. Kiecolt-Glaser
- J.K. Kiecolt-Glaser
- J.K. Kiecolt-Glaser
- J.K. Kiecolt-Glaser
- J.M. Darley
- J.M. Ruiz
- J.P. Harrell
- J.R. Hochstim
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.R. Kaplan
- J.S. Rumsfeld
- J.S. Wiggins
- J.S. Wiggins
- J.S. Wiggins
- J.S. Wiggins
- J.S. Wiggins
- J.S. Wiggins
- J.S. Wiggins
- J.T. Newsom
- J.T. Winslow
- J.W. Lynch
- J.W. Thibaut
- K. Arefjord
- K. Hooker
- K. James
- K. Orth-Gomer
- K. Orth-Gomer
- K. Orth-Gomer
- K. Skerrett
- K. Trobst
- K. Vedhara
- K.C. Light
- K.C. Light
- K.G. Keppel
- K.H. Ladwig
- K.L. Heffner
- K.M. Allen
- K.M. Grewen
- L. Jussim
- L. Rosenberg
- L.C. Gallo
- L.C. Gallo
- L.C. Gallo
- L.C. Gallo
- L.C. Gallo
- L.C. Gallo
- L.C. Hawkley
- L.E. Alden
- L.E. Bloor
- L.F. Berkman
- L.G. Russek
- L.H. Powell
- L.L. Northouse
- L.M. Horowitz
- L.M. Hunt
- L.S. Benjamin
- L.S. Benjamin
- M. Carlson
- M. Delon
- M. Hagedoorn
- M. Hagedoorn
- M. Hagedoorn
- M. Marmot
- M. Petersson
- M. Petersson
- M. Reiff
- M. Skelton
- M.A. Berkhuysen
- M.A. Cooper
- M.B. Gurtman
- M.B. Gurtman
- M.B. Gurtman
- M.C. Davis
- M.C. Whiteman
- M.D. Matheson
- M.E. Kurtz
- M.E. Pereira
- M.J. Meaney
- M.J. Rohrbaugh
- M.J. Stern
- M.J.B. Stanley
- M.M. Sanchez
- M.R. Adams
- M.R. Hebl
- N. Bolger
- N. Cantor
- N. Christenfeld
- N. Frasure-Smith
- N. Krieger
- N. Krieger
- N. Kutsukake
- N.B. Anderson
- N.T. Artinian
- N.T. Artinian
- P. Langeluddecke
- P. O’Farrell
- P. Watzlawick
- P.A. Obrist
- P.C. Brown
- P.C. Brown
- P.D. Sorlie
- P.D. Sorlie
- P.D. Trapnell
- P.G. Surtees
- P.L. Wachtel
- P.L. Wachtel
- P.M. Lantz
- P.P. Vitaliano
- P.P. Vitaliano
- R. Clark
- R. Lyons
- R. Schulz
- R. Schulz
- R.B. Case
- R.B. Zajonc
- R.C. Carson
- R.E. Greene Jr
- R.J. Windle
- R.K. Merton
- R.K. Merton
- R.L. Piferi
- R.L. Repetti
- R.M. Carney
- R.M. Sapolsky
- R.M. Sapolsky
- R.M. Sapolsky
- R.M. Seyfarth
- R.M. Seyfarth
- S. Kettunen
- S. Levine
- S. Manne
- S. Manne
- S. Volpi
- S.B. Manuck
- S.B. Manuck
- S.B. Manuck
- S.E. Taylor
- S.I. Owens
- S.J. Lepore
- S.J. Lepore
- S.J. Lepore
- S.K. Holmberg
- S.L. Manne
- S.L. Manne
- S.L. Manne
- S.M. Moore
- S.P. Mendoza
- S.P. Patterson
- S.R. Wimberly
- T. Leary
- T.B. Hamm
- T.O. Engebretson
- T.R. Insel
- T.R. Insel
- T.R. Insel
- T.W. Kamarck
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- T.W. Smith
- V. Chandra
- V. Fiske
- V.S. Helgeson
- V.S. Helgeson
- W. Gerin
- W. Gerin
- W. Mischel
- W. Smith
- W.J. Kop
- W.J. Scholte op Reimer
- W.M. Troxel
- Y. Kim
- Y.Y. Chen
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/2006
- Field of study
Gene silencing through RNA interference: Potential for therapeutics and functional genomics
- Author
- A. Fire
- A. Grishok
- A. Ishizuka
- A. Nykanen
- A. Smardon
- A.A. Caudy
- A.E. Pasquinelli
- A.G. Fraser
- A.J. Hamilton
- A.L. Jackson
- A.P. McCaffrey
- A.R. Van der Krol
- B. Wightman
- B.J. Reinhart
- B.J. Reinhart
- B.J. Reinhart
- C. Cogoni
- C. Cogoni
- C. Cogoni
- C. Dennis
- C. Llave
- C. Napoli
- C.D. Novina
- C.P. Paul
- C.P. Paul
- D. Castanotto
- D. Semizarov
- D. Yang
- D. Yang
- D. Zilberman
- D.A. Rubinson
- D.L. Lewis
- D.S. Schwarz
- E. Bernstein
- E. Billy
- E. Devroe
- E. Song
- E. Song
- E.C. Lai
- E.V. Makeyev
- F. Calegari
- F. Piano
- F. Piano
- G. Hutvagner
- G. Hutvagner
- G. Randall
- G. Sui
- G. Tiscornia
- G.A. Calin
- G.A. Coburn
- G.J. Hannon
- G.M. Barton
- H. Frankish
- H. Hasuwa
- H. Kawasaki
- H. Kawasaki
- H. Tabara
- H. Tabara
- H. Vaucheret
- H. Wu
- H. Xia
- I. Ha
- I.M. Hall
- I.M. Hall
- J. Brennecke
- J. Capodici
- J. Dostie
- J. Harborth
- J. Harborth
- J. Martinez
- J. Pothof
- J.A. Wilson
- J.C. Clemens
- J.C. Palauqui
- J.G. Doench
- J.M. Jacque
- J.R. Kennerdell
- J.R. Kennerdell
- J.T. Chi
- J.W. Myers
- J.Y. Yu
- K. Ashrafi
- L. Cerutti
- L. Gitlin
- L. Lum
- L. Manche
- L. Misquitta
- L. Timmons
- L. Zhang
- L.F. Sempere
- L.P. Lim
- L.P. Lim
- M. Amarzguioui
- M. Jiang
- M. Kisielow
- M. Lagos-Quintana
- M. Lagos-Quintana
- M. Lagos-Quintana
- M. Miyagishi
- M. Miyagishi
- M. Scherr
- M. Wilda
- M.A. Martinez
- M.A. Minks
- M.J. Clemens
- M.K. Montgomery
- M.N. Alder
- M.T. McManus
- M.T. McManus
- M.W. Rhoades
- M.Y. Seo
- N. Doi
- N. Mailand
- N. Romano
- N.C. Lau
- N.J. Caplen
- N.J. Caplen
- N.J. Caplen
- N.S. Lee
- P. Ahlquist
- P. Gonczy
- P. Gonzalez-Alegre
- P. Nagy
- P. Stein
- P. Xu
- P.D. Zamore
- P.J. Paddison
- P.J. Paddison
- P.J. Paddison
- Q. Ge
- Q. Jia
- R.C. Lee
- R.C. Lee
- R.F. Ketting
- R.F. Ketting
- R.S. Kamath
- S. Mousses
- S. Parrish
- S.B. Kapadia
- S.M. Elbashir
- S.M. Elbashir
- S.M. Elbashir
- S.M. Hammond
- S.M. Hammond
- S.S. Lee
- S.W. Knight
- T. Holen
- T. Kunath
- T. Sijen
- T.A. Vickers
- T.A. Volpe
- T.R. Brummelkamp
- T.R. Brummelkamp
- V. Ambros
- V. Bitko
- V. Vance
- V.M. Miller
- V.M. Stucke
- W.S. Park
- W.X. Li
- X.F. Qin
- Y. Aoki
- Y. Lee
- Y.L. Chiu
- Z. Mourelatos
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study