Ecological correlates of sociality in Pemphigus aphids, with a partial phylogeny of the genus

Background: Because the systems of social organisation in the various species of Pemphigus aphids span the continuum from asociality through to advanced sociality (typified by the possession of morphologically specialised soldiers), the genus is an ideal model clade in which to study the influence of ecology on the origins of eusociality. We made detailed study of the ecology of three gall-dwelling species that show clear differences in their levels of social behaviour. To elucidate evolutionary relationships and to attempt to estimate the number of origins of sociality, we also created a phylogeny based on sequences spanning the mitochondrial genes Cytochrome Oxidase I and II for nine species of Pemphigus. Results: P. spyrothecae, a highly social species with aggressive morphologically-specialised soldiers, has the longest galling phase, unsynchronised development of a large number of individuals in a densely-populated gall, and an extended period over which alates emerge. P. populi, a species with no soldiers, has the shortest galling phase, synchronised development of a small number of individuals in a sparsely-populated gall, and an extremely brief emergence period. The ecology of P. bursarius, which has behavioural soldiers that are not morphologically specialised, is intermediate between these two extremes. The galls of P. spyrothecae and P. bursarius form small openings during the course of the season and predation-related mortality is relatively high in these two species. Conversely, predation does not occur during the galling phase of P. populi, which has no soldiers but makes an entirely-sealed gall. The phylogeny allowed us to infer one likely point of origin of basic social defence and two independent origins of enhanced defence. Based on current knowledge of behaviour, the phylogeny also suggests that the defence trait may have been lost at least once. Conclusion: The life-history strategy of P. spyrothecae appears to be geared towards defending the colony against the constant threat of predation that faces the inhabitants of a long-lived, open gall. The life-history strategy of P. populi, on the other hand, is to avoid predation in the closed gall fortress and flee for the secondary host at the earliest opportunity. The life-history strategy of P. bursarius appears to represent a compromise between these strategies

The impacts of habitat disturbance on adult and larval dragonflies (Odonata) in rainforest streams in Sabah, Malaysian Borneo

$\textbf{1.}$ Dragonfly assemblages (Odonata: comprising damselflies, Zygoptera; and dragonflies, Anisoptera) in Southeast Asian rainforests are extremely diverse but increasingly threatened by habitat disturbance, including logging and conversion of forest to oil palm plantations. $\textbf{2.}$ Land-use change can affect dragonfly larval stages by altering within-stream environmental conditions, and adults by loss of perches, shade and hunting habitat. However, the extent to which dragonflies are affected by land-use change is not well known, and strategies for conservation are poorly developed. $\textbf{3.}$ We surveyed dragonfly adults and larvae, forest quality and stream environmental conditions across 16 streams in Sabah, Malaysia. Habitat surrounding the streams included pristine forest, selectively logged forest, oil palm with forested riparian buffer strips and oil palm without buffers. $\textbf{4.}$ Overall abundance and species richness of adult dragonflies stayed constant with habitat disturbance, but larval abundance and richness decreased with higher habitat disturbance, and larvae were largely absent from oil palm streams. There was also a clear shift in community composition of both adult and larval dragonflies. Anisoptera adults were more species rich and abundant, but Zygoptera adults were less species rich in more disturbed sites. $\textbf{5.}$ The presence of riparian buffers in oil palm plantations offered some protection for forest-associated dragonfly species, and streams with wider riparian buffers supported adult assemblages more similar to those found in logged forest. However, oil palm streams with riparian buffers still contained a depauperate larval assemblage compared to logged forest areas, and dragonfly assemblages in narrow riparian buffer streams were similar to those found in streams surrounded by continuous oil palm. $\textbf{6.}$ Our results provide clear evidence of the effect of land-use change on dragonflies. Conservation efforts to conserve forest communities should target the preservation of existing forest areas, but management within oil palm plantation landscapes to preserve riparian buffers can still have a marked beneficial effect on dragonfly communities.SHL was funded by a Natural Environment Research Council (NERC) studentship (1122589), Proforest, the Varley Gradwell Travelling Fellowship, Tim Whitmore Fund, Panton Trust and the Cambridge University Commonwealth Fund during this work. We have no conflicts of interest to declare

Microbial contributions to coupled arsenic and sulfur cycling in the acid-sulfide hot spring Champagne Pool, New Zealand

Acid-sulfide hot springs are analogs of early Earth geothermal systems where microbial metal(loid) resistance likely first evolved. Arsenic is a metalloid enriched in the acid-sulfide hot spring Champagne Pool (Waiotapu, New Zealand). Arsenic speciation in Champagne Pool follows reaction paths not yet fully understood with respect to biotic contributions and coupling to biogeochemical sulfur cycling. Here we present quantitative arsenic speciation from Champagne Pool, finding arsenite dominant in the pool, rim and outflow channel (55-75% total arsenic), and dithio- and trithioarsenates ubiquitously present as 18-25% total arsenic. In the outflow channel, dimethylmonothioarsenate comprised ≤9% total arsenic, while on the outflow terrace thioarsenates were present at 55% total arsenic. We also quantified sulfide, thiosulfate, sulfate and elemental sulfur, finding sulfide and sulfate as major species in the pool and outflow terrace, respectively. Elemental sulfur concentration reached a maximum at the terrace. Phylogenetic analysis of 16S rRNA genes from metagenomic sequencing revealed the dominance of Sulfurihydrogenibium at all sites and an increased archaeal population at the rim and outflow channel. Several phylotypes were found closely related to known sulfur- and sulfide-oxidizers, as well as sulfur- and sulfate-reducers. Bioinformatic analysis revealed genes underpinning sulfur redox transformations, consistent with sulfur speciation data, and illustrating a microbial role in sulfur-dependent transformation of arsenite to thioarsenate. Metagenomic analysis also revealed genes encoding for arsenate reductase at all sites, reflecting the ubiquity of thioarsenate and a need for microbial arsenate resistance despite anoxic conditions. Absence of the arsenite oxidase gene, aio, at all sites suggests prioritization of arsenite detoxification over coupling to energy conservation. Finally, detection of methyl arsenic in the outflow channel, in conjunction with increased sequences from Aquificaceae, supports a role for methyltransferase in thermophilic arsenic resistance. Our study highlights microbial contributions to coupled arsenic and sulfur cycling at Champagne Pool, with implications for understanding the evolution of microbial arsenic resistance in sulfidic geothermal systems

Folding Nature Back Upon Itself: Aristotle and the Rebirth of Physis

“Folding Nature Back Upon Itself: Aristotle and the Rebirth of Physis,” confronts us with nature’s receding presence and proposes to think through a rebirth of physis. Following Aristotle’s concept of physis, this paper locates two axes along which such a rethinking of physis can take place. The first axis is vertical, and turns around the fundamental tension that each natural being faces in seeking to overcome its own matter in order to reach transcendence. The second axis is horizontal, and follows Aristotle’s ideas that physis cannot unfold unless aided, stimulated, nurtured and enforced by external factors such as one’s environment, food, art, technology, and politics. This paper argues that vertical transcendence needs to be rethought to accommodate earthy, individual natural flourishing. Horizontal transcendence (e.g. rethinking the collaboration between different species and the collaboration between art and nature) may allow physis the kind of vertical transcendence that leads to its rebirth. This has important implications for both restoration projects and de-extinction projects: we need to acknowledge the role of human design for restoration and conservation projects, and envision humans no longer as external and superior to eco-systems, but as part of them. Only within newly conceptualized social-ecological systems can such a new vision of physis take flight

Odonata from the BEFTA Project area, Riau Province, Sumatra, Indonesia

The Odonata found during work on the Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) Project in Riau Province, Sumatra, Indonesia are reported. Prior to the BEFTA project we are only aware of published records of 37 species of Odonata from Riau Province (these are listed in an appendix). Seventy five species have been recorded during the BEFTA project, including five that have not (Archibasis incisura, Archibasis rebeccae and Pseudagrion williamsoni), or not definitely (Argiocnemis species and Mortonagrion species cf aborense), been recorded in Sumatra before. Macromia dione is recorded for the first time since its description. The number of species now known from Riau Province is 88; 51 of these are reported from the province for the first time here.Sinar Mas Agro Resources and Technology Research Institute (donation) and Isaac Newton Trust, Cambridg

Effects of Understory Vegetation Management on Plant Communities in Oil Palm Plantations in Sumatra, Indonesia

Oil palm plantations have expanded rapidly in recent decades, and are causing substantial impacts on tropical habitats and biodiversity. However, owing to its long lifespan (25-30 years), oil palm forms a much more varied and structurally-complex habitat than many other crops. This can include abundant understory vegetation and also epiphytes on palm trunks. However, the diversity of this plantation vegetation has been poorly studied, and there has been little consideration of the impacts of common plantation vegetation management practices on plant communities. We conducted a long-term vegetation management experiment that forms part of the Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) Programme in Riau, Indonesia. We manipulated herbicide and manual cutting regimes within mature oil palm plantations to create three different understory complexity treatments (Reduced, Normal, and Enhanced vegetation) across replicated sets of plots. Plant communities were surveyed before and after experimental understory vegetation treatments began in three different microhabitats: within the middle of the plantation block (core), on the road edge (edge) and on oil palm trunks (trunk). Part of the sampling was also conducted during a drought event. We recorded 120 plant species, which comprised a mixture of native, non-native, ‘beneficial’, and ‘problem’ species. We found substantial variation in plant communities between edge, core, and trunk microhabitats, indicating high levels of heterogeneity within the plantation. There were significant effects of varying understory treatment within both core and edge microhabitats, but no spillover of impacts into the trunk microhabitat. We also observed substantial impacts of drought on plant communities, with declines in either biomass, percentage cover, or richness seen across core, edge, and trunk microhabitats during low-rainfall periods. Our findings highlight the diversity of plant communities that can be supported within oil palm plantations, and the substantial impacts that management decisions, and also drought, can have on them. Given the role that diverse plant communities can have in supporting species in other groups, this is likely to have a significant impact on the wider plantation biodiversity. We suggest that plantation management strategies give greater consideration to within-plantation understory plant communities and choose more wildlife-friendly options where possible.This work was funded by The Isaac Newton Trust Cambridge, Golden Agri Resources, and the Natural Environment Research Council [grant number NE/P00458X/1]

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo

Freshwaters provide valuable habitat and important ecosystem services, but are threatened worldwide by habitat loss and degradation. In Southeast Asia, rainforest streams are particularly threatened by logging and conversion to oil palm, but we lack information on the impacts of this on freshwater environmental conditions, and the relative importance of catchment versus riparian-scale disturbance. We studied sixteen streams in Sabah, Borneo, including old growth forest, logged forest, and oil palm sites. We assessed forest quality in riparian zones and across the whole catchment, and compared it with stream environmental conditions including water quality, structural complexity and organic inputs. We found that streams with the highest riparian forest quality were nearly 4 °C cooler, over 20 cm deeper, had over 40% less sand, greater canopy cover, more stored leaf litter and wider channels than oil palm streams with the lowest riparian forest quality. Other variables were significantly related to catchment-scale forest quality, with streams in the highest quality forest catchments having 40% more bedrock and 20 times more dead wood, along with higher phosphorus, and lower nitrate-N levels compared to streams with the lowest catchment-scale forest quality. Although riparian buffer strips went some way to protecting waterways, they did not maintain fully forest-like stream conditions. In addition, logged forest streams still showed signs of disturbance 10-15 years after selective logging. Our results suggest that maintenance and restoration of buffer strips can help to protect healthy freshwater ecosystems, but logging practices and catchment-scale forest management also need to be considered.During this work SHL was funded by a Natural Environment Research Council (NERC) studentship (number 1122589), Proforest, the Varley Gradwell Travelling Fellowship, Tim Whitmore Fund, Panton Trust and the Cambridge University Commonwealth Fund. MP and RME were supported by European Research Council Project number 281986. HB was funded by the S.T. Lee Fund

Interphase chromosome positioning in in vitro porcine cells and ex vivo porcine tissues

Copyright @ 2012 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and 85 reproduction in any medium, provided the original author and source are credited. The article was made available through the Brunel University Open Access Publishing Fund.BACKGROUND: In interphase nuclei of a wide range of species chromosomes are organised into their own specific locations termed territories. These chromosome territories are non-randomly positioned in nuclei which is believed to be related to a spatial aspect of regulatory control over gene expression. In this study we have adopted the pig as a model in which to study interphase chromosome positioning and follows on from other studies from our group of using pig cells and tissues to study interphase genome re-positioning during differentiation. The pig is an important model organism both economically and as a closely related species to study human disease models. This is why great efforts have been made to accomplish the full genome sequence in the last decade. RESULTS: This study has positioned most of the porcine chromosomes in in vitro cultured adult and embryonic fibroblasts, early passage stromal derived mesenchymal stem cells and lymphocytes. The study is further expanded to position four chromosomes in ex vivo tissue derived from pig kidney, lung and brain. CONCLUSIONS: It was concluded that porcine chromosomes are also non-randomly positioned within interphase nuclei with few major differences in chromosome position in interphase nuclei between different cell and tissue types. There were also no differences between preferred nuclear location of chromosomes in in vitro cultured cells as compared to cells in tissue sections. Using a number of analyses to ascertain by what criteria porcine chromosomes were positioned in interphase nuclei; we found a correlation with DNA content.This study is partly supported by Sygen International PLC

All clinically-relevant blood components transmit prion disease following a single blood transfusion: a sheep model of vCJD

Variant CJD (vCJD) is an incurable, infectious human disease, likely arising from the consumption of BSE-contaminated meat products. Whilst the epidemic appears to be waning, there is much concern that vCJD infection may be perpetuated in humans by the transfusion of contaminated blood products. Since 2004, several cases of transfusion-associated vCJD transmission have been reported and linked to blood collected from pre-clinically affected donors. Using an animal model in which the disease manifested resembles that of humans affected with vCJD, we examined which blood components used in human medicine are likely to pose the greatest risk of transmitting vCJD via transfusion. We collected two full units of blood from BSE-infected donor animals during the pre-clinical phase of infection. Using methods employed by transfusion services we prepared red cell concentrates, plasma and platelets units (including leucoreduced equivalents). Following transfusion, we showed that all components contain sufficient levels of infectivity to cause disease following only a single transfusion and also that leucoreduction did not prevent disease transmission. These data suggest that all blood components are vectors for prion disease transmission, and highlight the importance of multiple control measures to minimise the risk of human to human transmission of vCJD by blood transfusion

Personhood, consciousness, and god : how to be a proper pantheist

© Springer Nature B.V. 2018In this paper I develop a theory of personhood which leaves open the possibility of construing the universe as a person. If successful, it removes one bar to endorsing pantheism. I do this by examining a rising school of thought on personhood, on which persons, or selves, are understood as identical to episodes of consciousness. Through a critique of this experiential approach to personhood, I develop a theory of self as constituted of qualitative mental contents, but where these contents are also capable of unconscious existence. On this theory, though we can be conscious of our selves, consciousness turns out to be inessential to personhood. This move, I then argue, provides resources for responding to the pantheist’s problem of God’s person.Peer reviewedFinal Accepted Versio