Correlates of variability in killer whale stereotyped call repertoires.

Killer whales vocalisations include repertoires of stereotyped call types (Ford 1984). There is strong evidence that these vocalisations are learnt (Hoelzel and Osborne 1986; Bain 1989; Deecke et al. 2000; Yurk et al. 2002). Call types can be group specific or shared amongst a number of groups, depending upon the social structure of the population or the call type (Ford 1991; Deecke 2003). It is thought that these call types function in the group cohesion and coordination (Hoelzel and Osborne 1986; Ford 1989 1991; Miller 2000, 2002). Some call types contain two overlapping, independently modulated, components each having different transmission properties (Miller 2002), these call types have a higher estimated active space than single- component call types (Miller 2006).This thesis investigates the evolution of these call type repertoires, focusing on call type usage and structure of the Southern Resident population over a period of 27 years, but including comparisons with other populations. I present evidence of hetero-specific mimicry and further evidence for vocal production and usage learning in killer whales. I compared the relative frequency of use of call types between two time periods (1977-81 & 2001-2003) and between contexts, such as direction changes with directional travel and multi-pod aggregations with single pods. I found a strong correlation of relative call type usage for each pod between the two time periods and each pod was easily acoustically distinguishable from the other two pods in both periods. The implications of these results for a role of call type repertoires in kin recognition are discussed. The least cohesive pod produced a significantly higher proportion of two-component call types than the other two more cohesive pods. Lone whales separated from their pod also used a rare subset of two-component call types rather than their pod's main call types. In recordings of multi-pod aggregations I recorded a high proportion of the same subset of two-component call types not commonly produced by any of the three pods individually, these call types were used in significantly higher proportions when all three pods were converging or socialising rather than travelling. These contextual correlates suggest that call types are selectively used and shared between groups based on their transmission properties. Each of the Southern Resident pods, J к and L, were found to increase the duration of their primary call type 10-15% in the presence of vessel noise in recordings made between 2001 & 2003. This response was not detected in recording from two earlier time periods, (1977 or 1989-1992). This change in behaviour correlated with an increase over the past decade in vessel presence around this population and may be an anti-masking strategy. I also compared the range and mean minimum and maximum fundamental frequency of the call types within the repertoires of six North Pacific killer whale populations. There was a degree of homogeneity in the range of call type fundamental frequencies within the repertoires of populations of the same ecotype, but differences between ecotypes. Offshore call types generally had a higher pitch fundamental frequency than transient or resident call types. All three resident populations had call types in their repertoires that had a maximum fundamental frequency 3 kHz higher than found in any transient call type

Fast and Accurate Retrieval of Methane Concentration From Imaging Spectrometer Data Using Sparsity Prior

The strong radiative forcing by atmospheric methane has stimulated interest in identifying natural and anthropogenic sources of this potent greenhouse gas. Point sources are important targets for quantification, and anthropogenic targets have the potential for emissions reduction. Methane point-source plume detection and concentration retrieval have been previously demonstrated using data from the Airborne Visible InfraRed Imaging Spectrometer-Next Generation (AVIRIS-NG). Current quantitative methods have tradeoffs between computational requirements and retrieval accuracy, creating obstacles for processing real-time data or large data sets from flight campaigns. We present a new computationally efficient algorithm that applies sparsity and an albedo correction to matched the filter retrieval of trace gas concentration path length. The new algorithm was tested using the AVIRIS-NG data acquired over several point-source plumes in Ahmedabad, India. The algorithm was validated using the simulated AVIRIS-NG data, including synthetic plumes of known methane concentration. Sparsity and albedo correction together reduced the root-mean-squared error of retrieved methane concentration-path length enhancement by 60.7% compared with a previous robust matched filter method. Background noise was reduced by a factor of 2.64. The new algorithm was able to process the entire 300 flight line 2016 AVIRIS-NG India campaign in just over 8 h on a desktop computer with GPU acceleration

Fast and Accurate Retrieval of Methane Concentration from Imaging Spectrometer Data Using Sparsity Prior

The strong radiative forcing by atmospheric methane has stimulated interest in identifying natural and anthropogenic sources of this potent greenhouse gas. Point sources are important targets for quantification, and anthropogenic targets have potential for emissions reduction. Methane point source plume detection and concentration retrieval have been previously demonstrated using data from the Airborne Visible InfraRed Imaging Spectrometer Next Generation (AVIRIS-NG). Current quantitative methods have tradeoffs between computational requirements and retrieval accuracy, creating obstacles for processing real-time data or large datasets from flight campaigns. We present a new computationally efficient algorithm that applies sparsity and an albedo correction to matched filter retrieval of trace gas concentration-pathlength. The new algorithm was tested using AVIRIS-NG data acquired over several point source plumes in Ahmedabad, India. The algorithm was validated using simulated AVIRIS-NG data including synthetic plumes of known methane concentration. Sparsity and albedo correction together reduced the root mean squared error of retrieved methane concentration-pathlength enhancement by 60.7% compared with a previous robust matched filter method. Background noise was reduced by a factor of 2.64. The new algorithm was able to process the entire 300 flightline 2016 AVIRIS-NG India campaign in just over 8 hours on a desktop computer with GPU acceleration.Comment: 13 pages, 11 figure

Considerations for maintaining family diversity in commercially mass-spawned penaeid shrimp: a case study on Penaeus monodon

Skewed family distributions are common in aquaculture species that are highly fecund, communally (mass) spawned, and/or communally reared. The magnitude of skews pose challenges for maintaining family-specific genetic diversity, as increased resources are required to detect individuals from underrepresented families, or reliably determine relative survival as a measure of family performance. There is limited understanding of family skews or changes in family proportion of communally reared shrimp under commercial rearing conditions and particularly how this may affect genotyping strategies to recover family performance data in breeding programs. In this study, three separate batches of shrimp, Penaeus monodon, were communally spawned and reared, and then sampled as larvae when ponds were stocked at 30 days of culture (DOC) and as juveniles from commercial ponds during harvest at 150 DOC. A total of 199 broodstock contributed to the 5,734 progeny that were genotyped with a custom multiplex single nucleotide polymorphism (SNP) panel, and family assignments were cross-referenced using two parentage assignment methods, CERVUS and COLONY. A total of 121 families were detected, with some families contributing up to 11% of progeny at 30 DOC and up to 18% of progeny at harvest. Significant changes were detected for 20% of families from 30 to 150 DOC, with up to a 9% change in relative contribution. Family skew data was applied in several models to determine the optimal sample size to detect families, along with the ability to detect changes in relative family contribution over time. Results showed that an order of magnitude increase in sampling was required to capture the lowest represented 25% of families, as well as significantly improve the accuracy to determine changes in family proportion from 30 to 150 DOC. Practical measures may be implemented at the hatchery to reduce family skews; a cost-effective measure may be to address the initial magnitude differences in viable progeny produced among families, by pooling equal quantities of hatched larvae from each family. This study demonstrates the relationships between skews in families under commercial conditions, the ability to accurately detect families, and the balance of sampling effort and genotyping cost in highly fecund species such as shrimp

Vasoactivity and Vasoconstriction Changes in Cattle Related to Time Off Toxic Endophyte-Infected Tall Fescue

Previous research has indicated that serotonergic and α-adrenergic receptors in peripheral vasculature are affected by exposure of cattle grazing toxic endophyte-infected (E+; Epichlöe coenophialia) tall fescue (Lolium arundinaceum). The objective of this experiment was to determine the period of time necessary for the vascular effects of ergot alkaloids to subside. Two experiments were conducted to investigate changes in vascular contractile response and vasoconstriction over time relative to removal from an ergot alkaloid-containing E+ tall fescue pasture. In Experiment 1, lateral saphenous vein biopsies were conducted on 21 predominantly Angus steers (357 ± 3 kg body weight) at 0 (n = 6), 7 (n = 6), 14 (n = 5), or 28 days (n = 4) after removal from grazing pasture (3.0 ha; endpoint ergovaline + ergovalinine = 1.35 mg/kg DM) for 126 days. In Experiment 2, lateral saphenous veins were biopsied from 24 Angus-cross steers (361 ± 4 kg body weight) at 0, 21, 42, and 63 days (n = 6 per time point) following removal from grazing tall fescue pastures (3.0 ha; first 88 days endpoint ergovaline + ergovalinine = 0.15 mg/kg DM; last 18 days endpoint ergovaline + ergovalinine = 0.57 mg/kg DM) for 106 total days. Six steers (370 ± 18 kg body weight) off of bermudagrass pasture for the same time interval were also biopsied on Day 0 and Day 63 (n = 3 per time point). Additionally, in Experiment 2, cross-sectional ultrasound scans of caudal artery at the fourth coccygeal vertebra were taken on Days 0, 8, 15, 21, 29, 36, 42, and 45 to determine mean artery luminal area to evaluate vasoconstriction. In both experiments, steers were removed from pasture and housed in a dry lot and fed a corn silage diet for the duration of biopsies and ultrasound scans. Biopsied vessels used to evaluate vasoactivity were cleaned, incubated in a multimyograph, and exposed to increasing concentrations of 4-Bromo-3,6-dimethoxybenzocyclobuten-1-yl) methylamine hydrobromide (TCB2; 5HT2A agonist), guanfacine (GF; α2A-adrenergic agonist), and (R)-(+)-m-nitrobiphenyline oxalate (NBP; α2C-adrenergic agonist) in both experiments and ergovaline (ERV) and ergotamine (ERT) in Experiments 1 and 2, respectively. In Experiment 1, days off pasture × agonist concentration was not significant (p \u3e 0.1) for all four compounds tested. In Experiment 2, GF, NBP, TCB2 and ERT were significant for days off pasture × agonist concentration interaction (p \u3c 0.02) and vasoactivity increased over time. Vasoactivity to agonists was reduced (p \u3c 0.05) when steers were initially removed from E+ tall fescue pasture compared to bermudagrass, but did not differ by Day 63 for any variable. Luminal areas of caudal arteries in steers grazed on E+ tall fescue relaxed and were similar to steers that had grazed bermudagrass for 36 days on non-toxic diet (p = 0.15). These data demonstrate changes in peripheral vasoactivity and recovery from vasoconstriction occur beyond five weeks off toxic pasture and 5HT2A receptors appear to be more dramatically affected in the lateral saphenous vein by grazing E+ tall fescue pasture than adrenergic receptors

Methane Mapping with Future Satellite Imaging Spectrometers

This study evaluates a new generation of satellite imaging spectrometers to measure point source methane emissions from anthropogenic sources. We used the Airborne Visible and Infrared Imaging Spectrometer Next Generation(AVIRIS-NG) images with known methane plumes to create two simulated satellite products. One simulation had a 30 m spatial resolution with similar to 200 Signal-to-Noise Ratio (SNR) in the Shortwave Infrared (SWIR) and the other had a 60 m spatial resolution with similar to 400 SNR in the SWIR; both products had a 7.5 nm spectral spacing. We applied a linear matched filter with a sparsity prior and an albedo correction to detect and quantify the methane emission in the original AVIRIS-NG images and in both satellite simulations. We also calculated an emission flux for all images. We found that all methane plumes were detectable in all satellite simulations. The flux calculations for the simulated satellite images correlated well with the calculated flux for the original AVIRIS-NG images. We also found that coarsening spatial resolution had the largest impact on the sensitivity of the results. These results suggest that methane detection and quantification of point sources will be possible with the next generation of satellite imaging spectrometers.Open access journalThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at [email protected]

False‐negative detections from environmental DNA collected in the presence of large numbers of killer whales (Orcinus orca)

While environmental DNA (eDNA) is becoming increasingly established in biodiversity monitoring of freshwater ecosystems, the use of eDNA surveys in the marine environment is still in its infancy. Here, we use two approaches: targeted quantitative PCR (qPCR) and whole-genome enrichment capture followed by shotgun sequencing in an effort to amplify killer whale DNA from seawater samples. Samples were collected in close proximity to killer whales in inshore and offshore waters, in varying sea conditions and from the surface and subsurface but none returned strongly positive detections of killer whale eDNA. We validated our laboratory methodologies by successfully amplifying a dilution series of a positive control of killer whale DNA. Furthermore, DNA of Atlantic mackerel, which was present at all sites during sampling, was successfully amplified from the same seawater samples, with positive detections found in ten of the eighteen eDNA extracts. We discuss the various eDNA collection and amplification methodologies used and the abiotic and biotic factors that influence eDNA detection. We discuss possible explanations for the lack of positive killer whale detections, potential pitfalls, and the apparent limitations of eDNA for genetic research on cetaceans, particularly in offshore regions

Panoramic SETI: Program Update and High-Energy Astrophysics Applications

Optical SETI (Search for Extraterrestrial Intelligence) instruments that can explore the very fast time domain, especially with large sky coverage, offer an opportunity for new discoveries that can complement multimessenger and time domain astrophysics. The Panoramic SETI experiment (PANOSETI) aims to observe optical transients with nanosecond to second duration over a wide field-of-view ($\thicksim$2,500 sq.deg.) by using two assemblies of tens of telescopes to reject spurious signals by coincidence detection. Three PANOSETI telescopes, connected to a White Rabbit timing network used to synchronize clocks at the nanosecond level, have been deployed at Lick Observatory on two sites separated by a distance of 677 meters to distinguish nearby light sources (such as Cherenkov light from particle showers in the Earth's atmosphere) from astrophysical sources at large distances. In parallel to this deployment, we present results obtained during four nights of simultaneous observations with the four 12-meter VERITAS gamma-ray telescopes and two PANOSETI telescopes at the Fred Lawrence Whipple Observatory. We report PANOSETI's first detection of astrophysical gamma rays, comprising three events with energies in the range between $\thicksim$15 TeV and $\thicksim$50 TeV. These were emitted by the Crab Nebula, and identified as gamma rays using joint VERITAS observations.Comment: 9 pages, 5 figures, SPIE Astronomical Telescopes + Instrumentation conference, 2022, Montr\'eal, Qu\'ebec, Canad