Effects of acute versus chronic hypoxia on DNA damage responses and genomic instability.

Questions exist concerning the effects of acute versus chronic hypoxic conditions on DNA replication and genomic stability that may influence tumorigenesis. Severe hypoxia causes replication arrest independent of S-phase checkpoint, DNA damage response, or transformation status. Arrests occur during both the initiation and elongation phases of DNA replication, correlated with a rapid decrease in available deoxynucleotide triphosphates. With fluctuating oxygen tensions in tumors, arrested hypoxic cells may undergo rapid reperfusion and reoxygenation that leads to reoxygenation-induced DNA damage. In cells subjected to chronic hypoxia, we found that replicative restart was inhibited along with numerous replication factors, including MCM6 and RPA, the latter of which limits the hypoxia-induced DNA damage response. In contrast, in cells where replicative restart occurred, it was accompanied by extensive reoxygenation-induced DNA damage and compromised DNA repair. We found that cells reoxygenated after acute hypoxia underwent rapid p53-dependent apoptosis. Our findings suggest that cells lacking functional p53 are more susceptible to genomic instability and potentially tumorigenesis if they experience reoxygenation after acute exposure to hypoxia

Decorrelating the Power Spectrum of Galaxies

It is shown how to decorrelate the (prewhitened) power spectrum measured from a galaxy survey into a set of high resolution uncorrelated band-powers. The treatment includes nonlinearity, but not redshift distortions. Amongst the infinitely many possible decorrelation matrices, the square root of the Fisher matrix, or a scaled version thereof, offers a particularly good choice, in the sense that the band-power windows are narrow, approximately symmetric, and well-behaved in the presence of noise. We use this method to compute band-power windows for, and the information content of, the Sloan Digital Sky Survey, the Las Campanas Redshift Survey, and the IRAS 1.2 Jy Survey.Comment: 11 pages, including 8 embedded PostScript figures. Minor changes to agree with published versio

VVV High proper motion stars I. The catalogue of bright Ks stars

The final, definitive version of this paper has been published in Monthly Notices of the Royal Astronomical Society, Vol. 464(1): 1247-1258, January 2017, DOI: 10.1093/mnras/stw2357, first published on line September 16, 2016, published by Oxford University Press on behalf of MNRAS.Knowledge of the stellar content near the Sun is important for a broad range of topics ranging from the search for planets to the study of Milky Way structure. The most powerful method for identifying potentially nearby stars is proper motion (PM) surveys. All old optical surveys avoid, or are at least substantially incomplete, near the Galactic plane. The depth and breadth of the "Vista Variables in Via Lactea" (VVV) near-IR survey significantly improves this situation. Taking advantage of the VVV survey database, we have measured PMs in the densest regions of the MW bulge and southern plane in order to complete the census of nearby objects. We have developed a custom PM pipeline based on VVV catalogues from the Cambridge Astronomy Survey Unit (CASU), by comparing the first epoch of JHKs with the multi-epoch Ks-bands acquired later. Taking advantage of the large time baseline between the 2MASS and the VVV observations, we also obtained 2MASS-VVV PMs. We present a near-IR proper motion catalogue for the whole area of the VVV survey, which includes 3003 moving stellar sources. All of these have been visually inspected and are real PM objects. Our catalogue is in very good agreement with the proper motion data supplied in IR catalogues outside the densest zone of the MW. The majority of the PM objects in our catalogue are nearby M-dwarfs, as expected. This new database allow us to identify 57 common proper motion binary candidates, among which are two new systems within ~30pc of the Sun.Peer reviewe

Oscillatory Shear Flow-Induced Alignment of Lamellar Melts of Hydrogen-Bonded Comb Copolymer Supramolecules

In this work we present the orientational behavior of comb copolymer-like supramolecules P4VP(PDP)1.0, obtained by hydrogen bonding between poly(4-vinylpyridine) and pentadecylphenol, during large-amplitude oscillatory shear flow experiments over a broad range of frequencies (0.001-10 Hz). The alignment diagram, presenting the macroscopic alignment in T/TODT vs ω/ωc, contains three regions of parallel alignment separated by a region of perpendicular alignment. For our material, the order-disorder temperature TODT = 67 °C and ωc, the frequency above which the distortion of the chain conformation dominates the materials’ viscoelasticity, is around 0.1 Hz at 61 °C. For the first time flipping from a pure transverse alignment via biaxial transverse/perpendicular alignment to a perpendicular alignment as a function of the strain amplitude was found.

A review of reporting of participant recruitment and retention in RCTs in six major journals

<p>Abstract</p> <p>Background</p> <p>Poor recruitment and retention of participants in randomised controlled trials (RCTs) is problematic but common. Clear and detailed reporting of participant flow is essential to assess the generalisability and comparability of RCTs. Despite improved reporting since the implementation of the CONSORT statement, important problems remain. This paper aims: (i) to update and extend previous reviews evaluating reporting of participant recruitment and retention in RCTs; (ii) to quantify the level of participation throughout RCTs.</p> <p>Methods</p> <p>We reviewed all reports of RCTs of health care interventions and/or processes with individual randomisation, published July–December 2004 in six major journals. Short, secondary or interim reports, and Phase I/II trials were excluded. Data recorded were: general RCT details; inclusion of flow diagram; participant flow throughout trial; reasons for non-participation/withdrawal; target sample sizes.</p> <p>Results</p> <p>133 reports were reviewed. Overall, 79% included a flow diagram, but over a third were incomplete. The majority reported the flow of participants at each stage of the trial after randomisation. However, 40% failed to report the numbers assessed for eligibility. Percentages of participants retained at each stage were high: for example, 90% of eligible individuals were randomised, and 93% of those randomised were outcome assessed. On average, trials met their sample size targets. However, there were some substantial shortfalls: for example 21% of trials reporting a sample size calculation failed to achieve adequate numbers at randomisation, and 48% at outcome assessment. Reporting of losses to follow up was variable and difficult to interpret.</p> <p>Conclusion</p> <p>The majority of RCTs reported the flow of participants well after randomisation, although only two-thirds included a complete flow chart and there was great variability over the definition of "lost to follow up". Reporting of participant eligibility was poor, making assessments of recruitment practice and external validity difficult. Reporting of participant flow throughout RCTs could be improved by small changes to the CONSORT chart.</p

Large Scale Searches for Brown Dwarfs and Free-Floating Planets

Searches of large scale surveys have resulted in the discovery of over 1000 brown dwarfs in the Solar neighbourhood. In this chapter we review the progress in finding brown dwarfs in large datasets, highlighting the key science goals, and summarising the surveys that have contributed most significantly to the current sample.Comment: Accepted to appear in the Handbook of Exoplanets (Springer); Editors: Hans J. Deeg & Juan Antonio Belmont