Global meta-analysis for controlling factors on carbon stable isotope ratios of lotic periphyton.

Carbon stable isotope ratios (δ(13)C) are widely used to trace resource transfer pathways, yet δ(13)C variation in freshwater autotrophs is not yet fully understood. We have analyzed data from 42 published studies, supplemented with some unpublished data, to show the determinants of lotic periphyton δ(13)C. At large spatial scales, we observed broad differences in periphyton δ(13)C among biomes and consistent longitudinal variation related to watershed area. Longitudinal increases in δ(13)C indicate the importance of in-stream processes on lotic carbon cycles and autotroph δ(13)C variation. At local spatial scales, periphyton δ(13)C was negatively related to canopy cover and water current velocity and positively related to chlorophyll a density. Autotroph δ(13)C varied among taxonomic groups. Cyanobacteria and red algae had significantly higher and lower δ(13)C than other taxa, respectively. A hierarchical model across spatial scales showed that local controls for periphyton δ(13)C were nested by regional controls, which suggested that productivity and CO(2) availability determine δ(13)C. Overall, our results reveal general patterns of periphyton δ(13)C and provide improved information for study design and the use of δ(13)C in isotopic mixing models in lotic food web studies

Phosphorus Transport in Intensively Managed Watersheds

An edited version of this paper was published by AGU. Copyright 2019 American Geophysical Union.Understanding controls of P movement through watersheds are essential for improved landscape management in intensively managed regions. Here, we analyze observational data from 104 gaged river sites and 176 nongaged river sites within agriculturally dominated watersheds of Minnesota, USA, to understand the role of landscape features, land use practices, climate variability, and biogeochemical processes in total, dissolved and particulate P dynamics at daily to annual scales. Our analyses demonstrate that factors mediating P concentration‐discharge relationships varied greatly across watersheds and included near‐channel sediment sources, lake and wetland interception, assimilation by algal P, and artificial land drainage. The majority of gaged sites exhibited mobilizing behavior for all forms of P at event (i.e., daily) timescales and chemostatic behavior at annual timescales. The large majority of watershed P export (>70%, on average) occurred during high flow conditions, suggesting that more frequent large storm events arising from climate change will drive increased P losses from agricultural watersheds without substantial management changes. We found that P export could be dominated by dissolved P, particulate P, or an even mix of the two forms, depending on watershed attributes. Implementation of management practices to control P losses must be guided by understanding of how local landscapes interact with current and future climate conditions. Managing for both dissolved and particulate P is required to reduce overall P load in many agricultural watersheds

Valuing improvements in the ecological integrity of local and regional waters using the biological condition gradient

Scientific knowledge related to quantifying the monetized benefits for landscape-wide water quality improvements does not meet current regulatory and benefit–cost analysis needs in the United States. In this study we addressed this knowledge gap by incorporating the Biological Condition Gradient (BCG) as a water quality metric into a stated preference survey capable of estimating the total economic value (use and nonuse) for aquatic ecosystem improvements. The BCG is grounded in ecological principles and generalizable and transferable across space. Moreover, as the BCG translates available data on biological condition into a score on a 6-point scale, it provides a simple metric that can be readily communicated to the public. We applied our BCG-based survey instrument to households across the Upper Mississippi, Ohio, and Tennessee river basins and report values for a range of potential improvements that vary by location, spatial scale, and the scope of the water quality change. We found that people are willing to pay twice as much for an improvement policy that targets their home watershed (defined as a four-digit hydrologic unit) versus a more distant one. We also found that extending the spatial scale of a local policy beyond the home watershed does not generate additional benefits to the household. Finally, our results suggest that nonuse sources of value (e.g., bequest value, intrinsic aesthetic value) are an important component of overall benefits

Photodegradation of methylmercury in stream ecosystems

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/109966/1/lno20135810013.pd

Rates and controls of nitrification in a large oligotrophic lake

Recent discoveries have altered prevailing paradigms concerning the conditions under which nitrification takes place and the organisms responsible for nitrification in aquatic ecosystems. In Lake Superior, nitrate (NO-3) concentrations have increased fivefold in the past century. Although previous evidence indicated that most NO-3 is generated by nitrification within the lake, important questions remain concerning the magnitude and controls of nitrification, and which microbial groups are primarily responsible for this process. We measured water-column nitrification rates in the western basin of Lake Superior during five research cruises from November 2009 to March 2011. Using in situ bottle incubations at 10 depths, we quantified nitrification rates using both the oxidation of 15N-labeled ammonium (NH+4) and the uptake of 14C associated with nitrification. Average rates of NH+4 oxidation ranged from 18-34 nmol N L-1 d-1 across the five cruises, similar to values reported for the coastal ocean, and two orders of magnitude lower than values reported from other lakes. Low nitrification rates observed in the epilimnion corresponded to the absence of ammonium-oxidizing archaea and nitrite-oxidizing bacteria. The measured rates of nitrification are \u3e 50-fold greater than the long-term NO-3 rise in the lake, indicating that N is actively cycling and that long-term change in this ecosystem is mediated by internal dynamics. © 2013, by the Association for the Sciences of Limnology and Oceanography, Inc

Stormwater Pond Maintenance, and Wetland Management for Phosphorus Retention

(c) 1036202Reduction in phosphorus is critical because phosphate, a dissolved form of phosphorus, sustains algal and cyanobacteria growth and causes a wide range of water-quality impairments in the ponds and downstream waters including algal blooms, excess floating plants, taste, and odor problems. Many stormwater ponds and wetlands that treat stormwater appear to be less effective than expected or originally intended in phosphorus retention, a key function of these ponds in urban environments. There is evidence that many old ponds are releasing phosphorus from bottom sediments at high rates and likely exporting phosphorus to downstream surface water bodies. A major outcome of this project is a pond Assessment Tool to assess the risk of high phosphorus concentrations in ponds and sediment release of phosphorus. The tool is based on 20 ponds with detailed water quality and phosphorus release measurements and a meta-analysis of 230 ponds in the Twin Cities metro area. Other outcomes included a working definition of a constructed stormwater pond and a wetland treating stormwater in the framework of water-body regulations, the development of recommendations for stormwater pond maintenance and wetland management, and an update to the sections on the constructed stormwater ponds section of the 2009 Stormwater Maintenance BMP Guide

An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis

Tuberculosis (TB), caused by infection with Mycobacterium tuberculosis (M. tuberculosis), is a major cause of morbidity and mortality worldwide and efforts to control TB are hampered by difficulties with diagnosis, prevention and treatment 1,2. Most people infected with M. tuberculosis remain asymptomatic, termed latent TB, with a 10% lifetime risk of developing active TB disease, but current tests cannot identify which individuals will develop disease 3. The immune response to M. tuberculosis is complex and incompletely characterized, hindering development of new diagnostics, therapies and vaccines 4,5. We identified a whole blood 393 transcript signature for active TB in intermediate and high burden settings, correlating with radiological extent of disease and reverting to that of healthy controls following treatment. A subset of latent TB patients had signatures similar to those in active TB patients. We also identified a specific 86-transcript signature that discriminated active TB from other inflammatory and infectious diseases. Modular and pathway analysis revealed that the TB signature was dominated by a neutrophil-driven interferon (IFN)-inducible gene profile, consisting of both IFN-γ and Type I IFNαβ signalling. Comparison with transcriptional signatures in purified cells and flow cytometric analysis, suggest that this TB signature reflects both changes in cellular composition and altered gene expression. Although an IFN signature was also observed in whole blood of patients with Systemic Lupus Erythematosus (SLE), their complete modular signature differed from TB with increased abundance of plasma cell transcripts. Our studies demonstrate a hitherto under-appreciated role of Type I IFNαβ signalling in TB pathogenesis, which has implications for vaccine and therapeutic development. Our study also provides a broad range of transcriptional biomarkers with potential as diagnostic and prognostic tools to combat the TB epidemic

Making a Significant Place: Excavations at the Late Mesolithic Site of Langley’s Lane, Midsomer Norton, Bath and North-East Somerset

Excavations at the site of Langley’s Lane, Bath and North-East Somerset, have revealed an important sequence of Late Mesolithic activity focused around an active tufa spring. The sequence of activity starts off as an aurochs kill and primary butchery site. Culturally appropriate depositional practices occur through the placement of a selection of bone in the wetland of the spring and the digging of pits around the spring margins. The spring at Langley’s Lane continued to be visited and more animal bone and lithic material was placed in the wetland. Finally, visits to the site involved yet more formalized activity in the form of pit digging and the creation of a stone surface. Activities such as these are difficult to locate in the archaeological record and Mesolithic ritual activity rare, making this a site of some significance to studies of Mesolithic NW Europe

Impacts of Poultry House Environment on Poultry Litter Bacterial Community Composition

Viral and bacterial pathogens are a significant economic concern to the US broiler industry and the ecological epicenter for poultry pathogens is the mixture of bedding material, chicken excrement and feathers that comprises the litter of a poultry house. This study used high-throughput sequencing to assess the richness and diversity of poultry litter bacterial communities, and to look for connections between these communities and the environmental characteristics of a poultry house including its history of gangrenous dermatitis (GD). Cluster analysis of 16S rRNA gene sequences revealed differences in the distribution of bacterial phylotypes between Wet and Dry litter samples and between houses. Wet litter contained greater diversity with 90% of total bacterial abundance occurring within the top 214 OTU clusters. In contrast, only 50 clusters accounted for 90% of Dry litter bacterial abundance. The sixth largest OTU cluster across all samples classified as an Arcobacter sp., an emerging human pathogen, occurring in only the Wet litter samples of a house with a modern evaporative cooling system. Ironically, the primary pathogenic clostridial and staphylococcal species associated with GD were not found in any house; however, there were thirteen 16S rRNA gene phylotypes of mostly Gram-positive phyla that were unique to GD-affected houses and primarily occurred in Wet litter samples. Overall, the poultry house environment appeared to substantially impact the composition of litter bacterial communities and may play a key role in the emergence of food-borne pathogens

Systems Biology Approaches Reveal a Specific Interferon-Inducible Signature in HTLV-1 Associated Myelopathy

Human T-lymphotropic virus type 1 (HTLV-1) is a retrovirus that persists lifelong in the host. In ∼4% of infected people, HTLV-1 causes a chronic disabling neuroinflammatory disease known as HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP). The pathogenesis of HAM/TSP is unknown and treatment remains ineffective. We used gene expression microarrays followed by flow cytometric and functional assays to investigate global changes in blood transcriptional profiles of HTLV-1-infected and seronegative individuals. We found that perturbations of the p53 signaling pathway were a hallmark of HTLV-1 infection. In contrast, a subset of interferon (IFN)-stimulated genes was over-expressed in patients with HAM/TSP but not in asymptomatic HTLV-1 carriers or patients with the clinically similar disease multiple sclerosis. The IFN-inducible signature was present in all circulating leukocytes and its intensity correlated with the clinical severity of HAM/TSP. Leukocytes from patients with HAM/TSP were primed to respond strongly to stimulation with exogenous IFN. However, while type I IFN suppressed expression of the HTLV-1 structural protein Gag it failed to suppress the highly immunogenic viral transcriptional transactivator Tax. We conclude that over-expression of a subset of IFN-stimulated genes in chronic HTLV-1 infection does not constitute an efficient host response but instead contributes to the development of HAM/TSP