Aquilegia kept positions

zipped text file of all genomic positions kept for population genetics analysis of 10 Aquilegia specie

README file

README file for data in this repositor

The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of A. coerulea 'Goldsmith', complemented by high-coverage sequencing data from 10 wild species covering the world-wide distribution. Our analyses reveal extensive allele sharing among species and demonstrate that introgression and selection played a role in the Aquilegia radiation. We also present the remarkable discovery that the evolutionary history of an entire chromosome differs from that of the rest of the genome - a phenomenon that we do not fully understand, but which highlights the need to consider chromosomes in an evolutionary context

biallelic SNPs

zipped vcf of all bialleleic SNPs called in 10 Aquilegia species plus Semiaquilegia. Species are referred to by short names as follows: species name.in.vcf geography Aquilegia_aurea IIUF europe Aquilegia_barnebyi IIUC north_america Aquilegia_chrysantha IIWY north_america Aquilegia_japonica IIWU asia Aquilegia_formosa IIWT north_america Aquilegia_longissima IIWX north_america Aquilegia_oxysepala IIWW asia Aquilegia_vulgaris IIUH europe Aquilegia_pubescens D14R north_america Aquilegia_sibirica IIUI asia Semiaquilegia SRR4 asi