Association and interaction analyses of eight genes under asthma linkage peaks

Background: Linkage studies have implicated the 2q33, 9p21, 11q13 and 20q13 regions in the regulation of allergic disease. The aim of this study was to test genetic variants in candidate genes from these regions for association with specific asthma traits. Methods: Ninety-five single nucleotide polymorphisms (SNP) located in eight genes (CD28, CTLA4, ICOS, ADAM23, ADAMTSL1, MS4A2, CDH26 and HRH3) were genotyped in >5000 individuals from Australian (n = 1162), Dutch (n = 99) and Danish (n = 303) families. Traits tested included doctor-diagnosed asthma, atopy, airway obstruction, total serum immunoglobulin (Ig) E levels and eosinophilia. Association was tested using both multivariate and univariate methods, with gene-wide thresholds for significance determined through simulation. Gene-by-gene and gene-by-environment analyses were also performed. Results: There was no overall evidence for association with seven of the eight genes tested when considering all genetic variation assayed in each gene. The exception was MS4A2 on chromosome 11q13, which showed weak evidence for association with IgE (gene-wide P < 0.05, rs502581). There were no significant gene-by-gene or gene-by-environment interaction effects after accounting for the number of tests performed. Conclusions: The individual variants genotyped in the 2q33, 9p21 and 20q13 regions do not explain a large fraction of the variation in the quantitative traits tested or have a major impact on asthma or atopy risk. Our results are consistent with a weak effect of MS4A2 polymorphisms on the variation of total IgE levels. © 2009 John Wiley & Sons A/S

The extended empirical process test for non-Gaussianity in the CMB, with an application to non-Gaussian inflationary models

In (Hansen et al. 2002) we presented a new approach for measuring non-Gaussianity of the Cosmic Microwave Background (CMB) anisotropy pattern, based on the multivariate empirical distribution function of the spherical harmonics a_lm of a CMB map. The present paper builds upon the same ideas and proposes several improvements and extensions. More precisely, we exploit the additional information on the random phases of the a_lm to provide further tests based on the empirical distribution function. Also we take advantage of the effect of rotations in improving the power of our procedures. The suggested tests are implemented on physically motivated models of non-Gaussian fields; Monte-Carlo simulations suggest that this approach may be very promising in the analysis of non-Gaussianity generated by non-standard models of inflation. We address also some experimentally meaningful situations, such as the presence of instrumental noise and a galactic cut in the map.Comment: 15 pages, 6 figures, submitted to Phys. Rev.

Non-Perturbative QCD Treatment of High-Energy Hadron-Hadron Scattering

Total cross-sections and logarithmic slopes of the elastic scattering cross-sections for different hadronic processes are calculated in the framework of the model of the stochastic vacuum. The relevant parameters of this model, a correlation length and the gluon condensate, are determined from scattering data, and found to be in very good agreement with values coming from completely different sources of information. A parameter-free relation is given between total cross-sections and slope parameters, which is shown to be remarkably valid up to the highest energies for which data exist.Comment: 60 pages, Heidelberg preprin

Higgs boson mass limits in perturbative unification theories

Motivated in part by recent demonstrations that electroweak unification into a simple group may occur at a low scale, we detail the requirements on the Higgs mass if the unification is to be perturbative. We do this for the Standard Model effective theory, minimal supersymmetry, and next-to-minimal supersymmetry with an additional singlet field. Within the Standard Model framework, we find that perturbative unification with sin2(thetaW)=1/4 occurs at Lambda=3.8 TeV and requires mh<460 GeV, whereas perturbative unification with sin2(thetaW)=3/8 requires mh<200 GeV. In supersymmetry, the presentation of the Higgs mass predictions can be significantly simplified, yet remain meaningful, by using a single supersymmetry breaking parameter Delta_S. We present Higgs mass limits in terms of Delta_S for the minimal supersymmetric model and the next-to-minimal supersymmetric model. We show that in next-to-minimal supersymmetry, the Higgs mass upper limit can be as large as 500 GeV even for moderate supersymmetry masses if the perturbative unification scale is low (e.g., Lambda=10 TeV).Comment: 20 pages, latex, 6 figures, references adde

Testing for non-Gaussianity of the cosmic microwave background in harmonic space: an empirical process approach

We present a new, model-independent approach for measuring non-Gaussianity of the Cosmic Microwave Background (CMB) anisotropy pattern. Our approach is based on the empirical distribution function of the normalized spherical harmonic expansion coefficients a_lm of a nearly full-sky CMB map, like the ones expected from forthcoming satellite experiments. Using a set of Kolmogorov-Smirnov type tests, we check for Gaussianity and independency of the a_lm. We test the method on two non-Gaussian toy-models of the CMB, one generated in spherical harmonic space and one in pixel (real) space. We also provide some rigorous results, possibly of independent interest, on the exact distribution of the spherical harmonic coefficients normalized by an estimated angular power spectrum.Comment: 29 pages, 7 figures, submitted to Phys. Rev.

Ecological Invasion, Roughened Fronts, and a Competitor's Extreme Advance: Integrating Stochastic Spatial-Growth Models

Both community ecology and conservation biology seek further understanding of factors governing the advance of an invasive species. We model biological invasion as an individual-based, stochastic process on a two-dimensional landscape. An ecologically superior invader and a resident species compete for space preemptively. Our general model includes the basic contact process and a variant of the Eden model as special cases. We employ the concept of a "roughened" front to quantify effects of discreteness and stochasticity on invasion; we emphasize the probability distribution of the front-runner's relative position. That is, we analyze the location of the most advanced invader as the extreme deviation about the front's mean position. We find that a class of models with different assumptions about neighborhood interactions exhibit universal characteristics. That is, key features of the invasion dynamics span a class of models, independently of locally detailed demographic rules. Our results integrate theories of invasive spatial growth and generate novel hypotheses linking habitat or landscape size (length of the invading front) to invasion velocity, and to the relative position of the most advanced invader.Comment: The original publication is available at www.springerlink.com/content/8528v8563r7u2742

Produtividade e vigor do maracujazeiro-amarelo plantado em covas e plantio direto sob manejo orgânico.

O objetivo deste trabalho foi avaliar o vigor e a produtividade do maracujazeiro-amarelo plantado em diferentes tamanhos de cova e plantio direto sob manejo orgânico. O experimento foi conduzido de 2005 a 2007, no Setor de Agricultura Ecológica da Universidade Federal do Acre, em delineamento de blocos casualizados, constituídos de cinco tratamentos, quatro repetições e quatro plantas por parcela. Foram avaliados cinco tipos de preparo do solo: T1 cova do tamanho do torrão (0,19 x 0,063m) com adubação em cobertura; T2 cova de 0,30 x 0,30 x 0,30m com adubação de plantio na cova; T3 cova de 0,30 x 0,30 x 0,30m com adubação de plantio em cobertura; T4 cova de 0,50 x 0,50 x 0,50m com adubação de plantio na cova; e T5 cova de 0,50 x 0,50 x 0,50m com adubação de plantio em cobertura. O tamanho da cova e o plantio direto não influenciaram o vigor da planta e a biomassa de raízes. O número de frutos por planta e a produtividade, na segunda e na somatória das duas safras, foram maiores com plantio direto e com covas cúbicas de 0,30m. Após dois anos de cultivo, a densidade do solo foi maior na camada de 0-5cm de profundidade num raio de 20cm da planta para o plantio em covas de 0,50m com adubação na cova e menor para o plantio direto, não havendo diferença entre os demais tratamentos. O plantio direto ou o plantio em covas pequenas com dimensões de 0,30 x 0,30 x 0,30m proporcionou maior produtividade de maracujá que o plantio em covas maiores, mesmo não influenciando o vigor das plantas e a massa seca de raízes

Transfer Matrices and Partition-Function Zeros for Antiferromagnetic Potts Models. V. Further Results for the Square-Lattice Chromatic Polynomial

We derive some new structural results for the transfer matrix of square-lattice Potts models with free and cylindrical boundary conditions. In particular, we obtain explicit closed-form expressions for the dominant (at large |q|) diagonal entry in the transfer matrix, for arbitrary widths m, as the solution of a special one-dimensional polymer model. We also obtain the large-q expansion of the bulk and surface (resp. corner) free energies for the zero-temperature antiferromagnet (= chromatic polynomial) through order q^{-47} (resp. q^{-46}). Finally, we compute chromatic roots for strips of widths 9 <= m <= 12 with free boundary conditions and locate roughly the limiting curves.Comment: 111 pages (LaTeX2e). Includes tex file, three sty files, and 19 Postscript figures. Also included are Mathematica files data_CYL.m and data_FREE.m. Many changes from version 1: new material on series expansions and their analysis, and several proofs of previously conjectured results. Final version to be published in J. Stat. Phy

Resistência a Septoria lycopersici em espécies de Solanum (Secção Lycopersicon) e em progênies de S. lycopersicum &#215; S. peruvianum

Septoria leaf spot (Septoria lycopersici) is one of the major fungal diseases of tomatoes (Solanum lycopersicum) in tropical and subtropical regions with humid climates and/or in areas cultivated under sprinkler irrigation systems. Sources of resistance have been found in accessions of Solanum (section Lycopersicon) species. However, many of the described sources are not effective under Brazilian conditions. The objective of this work was to evaluate wild and cultivated Solanum (section Lycopersicon) germplasm to S. lycopersici isolates. A collection of 124 accessions was initially evaluated under greenhouse conditions. Ten accessions were highly resistance (HR), whereas 33 were classified as having a resistant (R) response to S. lycopersici isolates. Field evaluation was also conducted with a sub-set of accessions identified as either HR or R in the greenhouse experiment. This field evaluation confirmed greenhouse tests and indicated the presence of some potential sources of rate-reducing resistance. One highly resistant and eight resistant S. habrochaites accessions were identified as being resistant under both conditions, confirming that this wild species is one of the most promising sources of resistance to S. lycopersici. Five new sources with high levels of resistance were found in S. peruvianum accessions (PI-306811, CNPH-1036, LA-1910, LA-1984 and LA-2744). One accession derived from an interspecific cross between S. lycopersicum and S. peruvianum was also found to be highly resistant and might be useful to introgress resistance factors from this wild species into cultivated tomato germplasm. However, additional breeding efforts will be necessary to introgress into the cultivated tomato the resistance factors identified in other S. peruvianum accessions due to the presence of natural crossing barriers between the two species.A mancha-de-septória (Septoria lycopersici) é importante doença fúngica do tomateiro (Solanum lycopersicum) em áreas tropicais e subtropicais com alta umidade ou quando esta hortaliça é cultivada sob irrigação por aspersão. Fontes de resistência têm sido encontradas em germoplasma de Solanum (secção Lycopersicon). No entanto, muitas das fontes descritas não funcionam nas condições brasileiras. Avaliou-se uma coleção de germoplasma de tomate cultivado e selvagem (Solanum secção Lycopersicon) visando identificar novas fontes de elevada resistência. Uma coleção de 124 acessos foi inicialmente avaliada sob condições de casa de vegetação. Somente dez acessos foram classificados como altamente resistentes e 33 foram classificados como resistentes. Um ensaio de campo foi também conduzido com um subconjunto de acessos promissores identificados no primeiro experimento. Foi confirmada a resposta da maioria dos acessos avaliados em casa de vegetação e indicou a presença de fontes de resistência capazes de reduzir a taxa de progresso da doença. Um acesso de S. habrochaites com elevada resistência e oito acessos resistentes foram identificados, confirmando que esta espécie representa uma das mais promissoras fontes de genes de resistência a S. lycopersici. Cinco novas fontes com elevados níveis de resistência foram identificadas em acessos da espécie S. peruvianum (PI-306811, CNPH-1036, LA-1910, LA-1984 e LA-2744). Um acesso, derivado de cruzamento interespecífico entre S. lycopersicum e S. peruvianum também mostrou-se altamente resistente e poderá ser útil na introgressão deste(s) gene(s) em germoplasma de tomateiro cultivado. No entanto, esforços adicionais de melhoramento serão necessários para transferir para o tomateiro cultivado os fatores de resistência identificados em outros acessos de S. peruvianum, uma vez que existem barreiras naturais de cruzamentos entre estas duas espécies