Ureide Metabolism in Non-nodulated Phaseolus vulgaris L

The distribution of ureide-N was studied throughout vegetative and reproductive growth of non-nodulated Phaseolus vulgaris L. (bushbean) grown in nitrate nutrient solution. Largest increases in ureide-N per plant were correlated with flowering and early pod formation and with seed filling. Highest amounts of ureides per organ were measured in stems and axillary trifoliates. Highest concentrations (μmol ureide-N g−1 fr. wt.) were measured in young developing organs and stems. Seeds did not accumulate ureides until the ureide content of pods had reached a maximum. Results obtained using the inhibitor of xanthine oxidase, allopurinol, are consistent with the origin of ureides via purine degradation but alternative pathways cannot be discounted. Leaves and stems were shown to have the ability to degrade allantoate via an enzymic proces

Vortex Tubes in Turbulence Velocity Fields at Reynolds Numbers 300-1300

The most elementary structures of turbulence, i.e., vortex tubes, are studied using velocity data obtained in a laboratory experiment for boundary layers with microscale Reynolds numbers 295-1258. We conduct conditional averaging for enhancements of a small-scale velocity increment and obtain the typical velocity profile for vortex tubes. Their radii are of the order of the Kolmogorov length. Their circulation velocities are of the order of the root-mean-square velocity fluctuation. We also obtain the distribution of the interval between successive enhancements of the velocity increment as the measure of the spatial distribution of vortex tubes. They tend to cluster together below about the integral length and more significantly below about the Taylor microscale. These properties are independent of the Reynolds number and are hence expected to be universal.Comment: 8 pages, to appear in Physical Review

Range-separated density-functional theory with random phase approximation: detailed formalism and illustrative applications

Using Green-function many-body theory, we present the details of a formally exact adiabatic-connection fluctuation-dissipation density-functional theory based on range separation, which was sketched in Toulouse, Gerber, Jansen, Savin and Angyan, Phys. Rev. Lett. 102, 096404 (2009). Range-separated density-functional theory approaches combining short-range density functional approximations with long-range random phase approximations (RPA) are then obtained as well-identified approximations on the long-range Green-function self-energy. Range-separated RPA-type schemes with or without long-range Hartree-Fock exchange response kernel are assessed on rare-gas and alkaline-earth dimers, and compared to range-separated second-order perturbation theory and range-separated coupled-cluster theory.Comment: 15 pages, 3 figures, 2 table

Levy stable distributions via associated integral transform

We present a method of generation of exact and explicit forms of one-sided, heavy-tailed Levy stable probability distributions g_{\alpha}(x), 0 \leq x < \infty, 0 < \alpha < 1. We demonstrate that the knowledge of one such a distribution g_{\alpha}(x) suffices to obtain exactly g_{\alpha^{p}}(x), p=2, 3,... Similarly, from known g_{\alpha}(x) and g_{\beta}(x), 0 < \alpha, \beta < 1, we obtain g_{\alpha \beta}(x). The method is based on the construction of the integral operator, called Levy transform, which implements the above operations. For \alpha rational, \alpha = l/k with l < k, we reproduce in this manner many of the recently obtained exact results for g_{l/k}(x). This approach can be also recast as an application of the Efros theorem for generalized Laplace convolutions. It relies solely on efficient definite integration.Comment: 12 pages, typos removed, references adde

Volume-energy correlations in the slow degrees of freedom of computer-simulated phospholipid membranes

Constant-pressure molecular-dynamics simulations of phospholipid membranes in the fluid phase reveal strong correlations between equilibrium fluctuations of volume and energy on the nanosecond time-scale. The existence of strong volume-energy correlations was previously deduced indirectly by Heimburg from experiments focusing on the phase transition between the fluid and the ordered gel phases. The correlations, which are reported here for three different membranes (DMPC, DMPS-Na, and DMPSH), have volume-energy correlation coefficients ranging from 0.81 to 0.89. The DMPC membrane was studied at two temperatures showing that the correlation coefficient increases as the phase transition is approached

Probability-Changing Cluster Algorithm: Study of Three-Dimensional Ising Model and Percolation Problem

We present a detailed description of the idea and procedure for the newly proposed Monte Carlo algorithm of tuning the critical point automatically, which is called the probability-changing cluster (PCC) algorithm [Y. Tomita and Y. Okabe, Phys. Rev. Lett. {\bf 86} (2001) 572]. Using the PCC algorithm, we investigate the three-dimensional Ising model and the bond percolation problem. We employ a refined finite-size scaling analysis to make estimates of critical point and exponents. With much less efforts, we obtain the results which are consistent with the previous calculations. We argue several directions for the application of the PCC algorithm.Comment: 6 pages including 8 eps figures, to appear in J. Phys. Soc. Jp

Critical Decay at Higher-Order Glass-Transition Singularities

Within the mode-coupling theory for the evolution of structural relaxation in glass-forming systems, it is shown that the correlation functions for density fluctuations for states at A_3- and A_4-glass-transition singularities can be presented as an asymptotic series in increasing inverse powers of the logarithm of the time t: $\phi(t)-f\propto \sum_i g_i(x)$, where $g_n(x)=p_n(\ln x)/x^n$ with p_n denoting some polynomial and x=ln (t/t_0). The results are demonstrated for schematic models describing the system by solely one or two correlators and also for a colloid model with a square-well-interaction potential.Comment: 26 pages, 7 figures, Proceedings of "Structural Arrest Transitions in Colloidal Systems with Short-Range Attractions", Messina, Italy, December 2003 (submitted

An Evolutionary Reduction Principle for Mutation Rates at Multiple Loci

A model of mutation rate evolution for multiple loci under arbitrary selection is analyzed. Results are obtained using techniques from Karlin (1982) that overcome the weak selection constraints needed for tractability in prior studies of multilocus event models. A multivariate form of the reduction principle is found: reduction results at individual loci combine topologically to produce a surface of mutation rate alterations that are neutral for a new modifier allele. New mutation rates survive if and only if they fall below this surface - a generalization of the hyperplane found by Zhivotovsky et al. (1994) for a multilocus recombination modifier. Increases in mutation rates at some loci may evolve if compensated for by decreases at other loci. The strength of selection on the modifier scales in proportion to the number of germline cell divisions, and increases with the number of loci affected. Loci that do not make a difference to marginal fitnesses at equilibrium are not subject to the reduction principle, and under fine tuning of mutation rates would be expected to have higher mutation rates than loci in mutation-selection balance. Other results include the nonexistence of 'viability analogous, Hardy-Weinberg' modifier polymorphisms under multiplicative mutation, and the sufficiency of average transmission rates to encapsulate the effect of modifier polymorphisms on the transmission of loci under selection. A conjecture is offered regarding situations, like recombination in the presence of mutation, that exhibit departures from the reduction principle. Constraints for tractability are: tight linkage of all loci, initial fixation at the modifier locus, and mutation distributions comprising transition probabilities of reversible Markov chains.Comment: v3: Final corrections. v2: Revised title, reworked and expanded introductory and discussion sections, added corollaries, new results on modifier polymorphisms, minor corrections. 49 pages, 64 reference

Towards an effective potential for the monomer, dimer, hexamer, solid and liquid forms of hydrogen fluoride

We present an attempt to build up a new two-body effective potential for hydrogen fluoride, fitted to theoretical and experimental data relevant not only to the gas and liquid phases, but also to the crystal. The model is simple enough to be used in Molecular Dynamics and Monte Carlo simulations. The potential consists of: a) an intra-molecular contribution, allowing for variations of the molecular length, plus b) an inter-molecular part, with three charged sites on each monomer and a Buckingham "exp-6" interaction between fluorines. The model is able to reproduce a significant number of observables on the monomer, dimer, hexamer, solid and liquid forms of HF. The shortcomings of the model are pointed out and possible improvements are finally discussed.Comment: LaTeX, 24 pages, 2 figures. For related papers see also http://www.chim.unifi.it:8080/~valle