Tversky loss function for image segmentation using 3D fully convolutional deep networks

Fully convolutional deep neural networks carry out excellent potential for fast and accurate image segmentation. One of the main challenges in training these networks is data imbalance, which is particularly problematic in medical imaging applications such as lesion segmentation where the number of lesion voxels is often much lower than the number of non-lesion voxels. Training with unbalanced data can lead to predictions that are severely biased towards high precision but low recall (sensitivity), which is undesired especially in medical applications where false negatives are much less tolerable than false positives. Several methods have been proposed to deal with this problem including balanced sampling, two step training, sample re-weighting, and similarity loss functions. In this paper, we propose a generalized loss function based on the Tversky index to address the issue of data imbalance and achieve much better trade-off between precision and recall in training 3D fully convolutional deep neural networks. Experimental results in multiple sclerosis lesion segmentation on magnetic resonance images show improved F2 score, Dice coefficient, and the area under the precision-recall curve in test data. Based on these results we suggest Tversky loss function as a generalized framework to effectively train deep neural networks

Magnetotransport near a quantum critical point in a simple metal

We use geometric considerations to study transport properties, such as the conductivity and Hall coefficient, near the onset of a nesting-driven spin density wave in a simple metal. In particular, motivated by recent experiments on vanadium-doped chromium, we study the variation of transport coefficients with the onset of magnetism within a mean-field treatment of a model that contains nearly nested electron and hole Fermi surfaces. We show that most transport coefficients display a leading dependence that is linear in the energy gap. The coefficient of the linear term, though, can be small. In particular, we find that the Hall conductivity $\sigma_{xy}$ is essentially unchanged, due to electron-hole compensation, as the system goes through the quantum critical point. This conclusion extends a similar observation we made earlier for the case of completely flat Fermi surfaces to the immediate vicinity of the quantum critical point where nesting is present but not perfect.Comment: 11 pages revtex, 4 figure

New Magnetic Excitations in the Spin-Density-Wave of Chromium

Low-energy magnetic excitations of chromium have been reinvestigated with a single-Q crystal using neutron scattering technique. In the transverse spin-density-wave phase a new type of well-defined magnetic excitation is found around (0,0,1) with a weak dispersion perpendicular to the wavevector of the incommensurate structure. The magnetic excitation has an energy gap of E ~ 4 meV and at (0,0,1) exactly corresponds to the Fincher mode previously studied only along the incommensurate wavevector.Comment: 4 pages, 4 figure

Vacuum polarization for lukewarm black holes

We compute the renormalized expectation value of the square of a quantum scalar field on a Reissner-Nordström–de Sitter black hole in which the temperatures of the event and cosmological horizons are equal (“lukewarm” black hole). Our numerical calculations for a thermal state at the same temperature as the two horizons indicate that this renormalized expectation value is regular on both the event and cosmological horizons. We are able to show analytically, using an approximation for the field modes near the horizons, that this is indeed the case

Replicate Wolter-I x-ray mirrors

Cylindrical (hyperbolic - parabolic Wolter I) mirrors have been electroformed from nickel over an electroless nickel-phosphorous (NiP) plated aluminum mandrel in support of the NASA AXAF-S x-ray spectrometer program. The electroless nickel was diamond turned and polished to achieve a surface finish of 10 angstroms rms or better. Gold was then plated on the nickel alloy after an electrochemical passivation step. Next a heavy layer of pure nickel was plated one millimeter thick with controlled stress at zero using a commercial PID program to form the actual mirror. This shell was removed from the NiP alloy coated mandrel by cryogenic cooling and contraction of the aluminum to release the mirror. It is required that the gold not adhere well to the NiP but all other plated coatings must exhibit good adherence. Four mirrors were fabricated from two mandrels prepared by this method. The area of each part is 0.7 square meters (7.5 square feet)

Fluctuation-induced first-order phase transition in Dzyaloshinskii-Moriya helimagnets

Two centuries of research on phase transitions have repeatedly highlighted the importance of critical fluctuations that abound in the vicinity of a critical point. They are at the origin of scaling laws obeyed by thermodynamic observables close to second-order phase transitions resulting in the concept of universality classes, that is of paramount importance for the study of organizational principles of matter. Strikingly, in case such soft fluctuations are too abundant they may alter the nature of the phase transition profoundly; the system might evade the critical state altogether by undergoing a discontinuous first-order transition into the ordered phase. Fluctuation-induced first-order transitions have been discussed broadly and are germane for superconductors, liquid crystals, or phase transitions in the early universe, but clear experimental confirmations remain scarce. Our results from neutron scattering and thermodynamics on the model Dzyaloshinskii-Moriya (DM) helimagnet (HM) MnSi show that such a fluctuation-induced first-order transition is realized between its paramagnetic and HM state with remarkable agreement between experiment and a theory put forward by Brazovskii. While our study clarifies the nature of the HM phase transition in MnSi that has puzzled scientists for several decades, more importantly, our conclusions entirely based on symmetry arguments are also relevant for other DM-HMs with only weak cubic magnetic anisotropies. This is in particular noteworthy in light of a wide range of recent discoveries that show that DM helimagnetism is at the heart of problems such as topological magnetic order, multiferroics, and spintronics.Comment: 19 pages, 9 figures, 2 table

Magnetic phase diagram and transport properties of FeGe_2

We have used resistivity measurements to study the magnetic phase diagram of the itinerant antiferromagnet FeGe_2 in the temperature range from 0.3->300 K in magnetic fields up to 16 T. In contrast to theoretical predictions, the incommensurate spin density wave phase is found to be stable at least up to 16 T, with an estimated critical field \mu _0H_c of ~ 30 T. We have also studied the low temperature magnetoresistance in the [100], [110], and [001] directions. The transverse magnetoresistance is well described by a power law for magnetic fields above 1 T with no saturation observed at high fields. We discuss our results in terms of the magnetic structure and the calculated electronic bandstructure of FeGe_2. We have also observed, for the first time in this compound, Shubnikov-de Haas oscillations in the transverse magnetoresistance with a frequency of 190 +- 10 T for a magnetic field along [001].Comment: 13 pages, RevTeX, 7 postscript figures, to appear in Journal of Physics: Condensed Matte

Spin and charge excitations in incommensurate spin density waves

Collective excitations both for spin- and charge-channels are investigated in incommensurate spin density wave (or stripe) states on two-dimensional Hubbard model. By random phase approximation, the dynamical susceptibility \chi(q,\omega) is calculated for full range of (q,\omega) with including all higher harmonics components. An intricate landscape of the spectra in \chi(q,\omega) is obtained. We discuss the anisotropy of the dispersion cones for spin wave excitations, and for the phason excitation related to the motion of the stripe line. Inelastic neutron experiments on Cr and its alloys and stripe states of underdoped cuprates are proposed