Writing the Island

The historians may call this a failed expedition. For the first time, we didn’t complete a circumnavigation of Isla Espiritu Santo, an accomplishment that usually entails 50 miles of epic paddling in sea kayaks so loaded with food, water, and gear that it takes eight students to lift one. But in March 2010 it was not to be; El Norte, the bully of the Sea of Cortez, had nearly blown us off the beach, and we’d had to remain on the lee side of the island, roaming the canyons and diving the reefs because we couldn’t safely kayak the windward swells. And yet, these students not only managed to learn a thing or two about Baja’s natural history, they managed to go about the business of learning in such a way that they became the tightest community of any class with which I’ve worked. The reflections below, taken from my field notes, are an attempt to figure out what went right, so very right, during an experience that had all the underpinnings of a pedagogical disaster

The Buzz about Sustainability

I wear sweater vests, I never split infinitives, I trim my beard close, and I read a poem at the beginning of every class. More to the point, as a member of the English faculty at a distinguished university, I distrust any word that had not been coined by the time my father—himself formerly a professor at a Jesuit university—completed his undergraduate studies. So what am I doing as the faculty director of a Residential Learning Community (RLC) organized around the theme of “sustainability”? In the past 18 months, the university that employs me hired its first sustainability coordinator, held its first Campus Sustainability Day, inaugurated a sustainability- across-the-curriculum program, has looked at ways in which sustainability might serve as a key theme for upper-division courses in the new Core Curriculum, and approved a Sustainable Living Research Project at the undergraduate level. Even this fine magazine has decided to dedicate this issue to the theme of sustainability

Change the Game

Not only was it a wild idea, it was someone else’s wild idea. Having spent the three previous summers working feverishly on a book, I’d decided that I was due for a more restful interlude between spring and fall quarters. My summer was to be heavy on contemplation as I scratched together a prospectus for a new book. There was to be ample time for grant writing. In my spare time I would work on a sabbatical proposal. There was the pile of books I was eager to get to, heavy on obscure nature writers. Then came an email from Santa Clara President Michael Engh, S.J., in early June announcing that a papal encyclical on the environment was on its way. He was inviting me to serve on a committee to host an academic conference in early November about this encyclical. Fr. Engh wanted to invite the cardinal who’d consulted closely with the pope during the encyclical’s composition. One of my colleagues, David DeCosse, came up with the wild idea that three of us from the new committee should awaken early in the morning on Thursday, June 18—the date scheduled for the encyclical’s release—download it from the Vatican website, read it carefully but quickly, and then collaborate on an op-ed that we’d publish that afternoon

What Does the Desert Say?: A Rhetorical Analysis of Desert Solitaire

While Edward Abbey\u27s Desert Solitaire has suffered no dearth of critical at tention since its publication in 1968, most of the discourse concerning this work has taken the form of literary criticism, with an increasingly ecocritical focus having been attended to over the course of the past decade. Little, if anything, however, has been published critiquing Abbey\u27s masterwork from the perspec tive of rhetorical analysis. Such analysis, I will contend in what follows, casts new light on the work, and is instrumental in appreciating the more polemic elements of the text. I begin, therefore, with the observation that the author him self must have considered the book, at least partially, a polemic, having gone so far as grant the fifth chapter the less-than-romantic title: Polemic: Industrial Tourism and the National Parks. Richard Shelton, in his essay Creeping up on Desert Solitaire\u27\u27 argues that the book was written by an arch-romantic trying desperately not to be a roman tic (102). The tension between Abbey\u27s romanticism and his cynical realism becomes an integral part of the persuasion driving the chapters narrated in the voice identified as Abbey\u27s. The rhetor\u27s voice mirrors the tensions plaguing the landscape he describes, and this tension serves to propagate Abbey\u27s polemic persuasively. Shelton opines, No character in any of his novels has the depth, the believability, the absolute feel of a real person that Ed Abbey in Desert Soli taire has (1 04

The journal’s the thing: teaching natural history and nature writing in Baja California Sur

The skills of making informed observations, synthesizing those observations, and communicating them effectively are central to the naturalist. Developing university courses that optimize instruction in these skills simultaneously can, however, be a challenge. Here we describe a program at Santa Clara University comprised of two integrated co-requisite courses, Writing Natural History (ENVS 142) and The Natural History of Baja (BIOL/ENVS 144). Lectures through the 10-week winter quarter expand students’ knowledge of the ecosystems and biodiversity of the Baja Peninsula and help them to develop descriptive writing skills. The courses culminate in a ten-day expedition to the Baja Peninsula and Isla Espiritu Santo in the Sea of Cortez, where students explore local ecosystems and journal about their experiences. The result is a program in which students expand their skills in natural history and develop their own voices as writers and natural historians. We describe the structure and philosophy of this program and provide details on associated lecture topics, logistics, exercises, and readings

An Invitation for Engagement: Assigning and Assessing Field Notes to Promote Deeper Levels of Observation

This paper explores current practices for teaching the discipline of keeping field notes within academic natural history courses. We investigate how journal projects can be structured to promote engagement with the natural world while emphasizing the importance of recording accurate and honest observations. Particular attention is paid herein to the assignment of field notes, and to the process of assessing the results of these assignments. Our discussion includes results from an informal survey of best practices among colleagues representing numerous natural history disciplines

Successful technical trading agents using genetic programming.

Genetic programming (GP) has proved to be a highly versatile and useful tool for identifying relationships in data for which a more precise theoretical construct is unavailable. In this project, we use a GP search to develop trading strategies for agent based economic models. These strategies use stock prices and technical indicators, such as the moving average convergence/divergence and various exponentially weighted moving averages, to generate buy and sell signals. We analyze the effect of complexity constraints on the strategies as well as the relative performance of various indicators. We also present innovations in the classical genetic programming algorithm that appear to improve convergence for this problem. Technical strategies developed by our GP algorithm can be used to control the behavior of agents in economic simulation packages, such as ASPEN-D, adding variety to the current market fundamentals approach. The exploitation of arbitrage opportunities by technical analysts may help increase the efficiency of the simulated stock market, as it does in the real world. By improving the behavior of simulated stock markets, we can better estimate the effects of shocks to the economy due to terrorism or natural disasters

Microbial Lag Phase can be Indicative of, or Independent From, Cellular Stress

Measures of microbial growth, used as indicators of cellular stress, are sometimes quantified at a single time-point. In reality, these measurements are compound representations of length of lag, exponential growth-rate, and other factors. Here, we investigate whether length of lag phase can act as a proxy for stress, using a number of model systems (Aspergillus penicillioides; Bacillus subtilis; Escherichia coli; Eurotium amstelodami, E. echinulatum, E. halophilicum, and E. repens; Mrakia frigida; Saccharomyces cerevisiae; Xerochrysium xerophilum; Xeromyces bisporus) exposed to mechanistically distinct types of cellular stress including low water activity, other solute-induced stresses, and dehydration-rehydration cycles. Lag phase was neither proportional to germination rate for X. bisporus (FRR3443) in glycerol-supplemented media (r2 = 0.012), nor to exponential growth-rates for other microbes. In some cases, growth-rates varied greatly with stressor concentration even when lag remained constant. By contrast, there were strong correlations for B. subtilis in media supplemented with polyethylene-glycol 6000 or 600 (r2 = 0.925 and 0.961), and for other microbial species. We also analysed data from independent studies of food-spoilage fungi under glycerol stress (Aspergillus aculeatinus and A. sclerotiicarbonarius); mesophilic/psychrotolerant bacteria under diverse, solute-induced stresses (Brochothrix thermosphacta, Enterococcus faecalis, Pseudomonas fluorescens, Salmonella typhimurium, Staphylococcus aureus); and fungal enzymes under acid-stress (Terfezia claveryi lipoxygenase and Agaricus bisporus tyrosinase). These datasets also exhibited diversity, with some strong- and moderate correlations between length of lag and exponential growth-rates; and sometimes none. In conclusion, lag phase is not a reliable measure of stress because length of lag and growth-rate inhibition are sometimes highly correlated, and sometimes not at all

The use of phylogeny to interpret cross-cultural patterns in plant use and guide medicinal plant discovery: an example from Pterocarpus (Leguminosae)

The study of traditional knowledge of medicinal plants has led to discoveries that have helped combat diseases and improve healthcare. However, the development of quantitative measures that can assist our quest for new medicinal plants has not greatly advanced in recent years. Phylogenetic tools have entered many scientific fields in the last two decades to provide explanatory power, but have been overlooked in ethnomedicinal studies. Several studies show that medicinal properties are not randomly distributed in plant phylogenies, suggesting that phylogeny shapes ethnobotanical use. Nevertheless, empirical studies that explicitly combine ethnobotanical and phylogenetic information are scarce.In this study, we borrowed tools from community ecology phylogenetics to quantify significance of phylogenetic signal in medicinal properties in plants and identify nodes on phylogenies with high bioscreening potential. To do this, we produced an ethnomedicinal review from extensive literature research and a multi-locus phylogenetic hypothesis for the pantropical genus Pterocarpus (Leguminosae: Papilionoideae). We demonstrate that species used to treat a certain conditions, such as malaria, are significantly phylogenetically clumped and we highlight nodes in the phylogeny that are significantly overabundant in species used to treat certain conditions. These cross-cultural patterns in ethnomedicinal usage in Pterocarpus are interpreted in the light of phylogenetic relationships.This study provides techniques that enable the application of phylogenies in bioscreening, but also sheds light on the processes that shape cross-cultural ethnomedicinal patterns. This community phylogenetic approach demonstrates that similar ethnobotanical uses can arise in parallel in different areas where related plants are available. With a vast amount of ethnomedicinal and phylogenetic information available, we predict that this field, after further refinement of the techniques, will expand into similar research areas, such as pest management or the search for bioactive plant-based compounds

Seeking and sharing: why the pulmonaryn fibrosis community engages the web 2.0 environment

Background Pulmonary fibrosis (PF) is a rare, progressive disease that affects patients and their loved ones on many levels. We sought to better understand the needs and interests of PF patients and their loved ones (collectively “reader-participants”) by systematically analyzing their engagement with the World Wide Web (the current version referred to as Web 2.0). Methods Data were collected from three PF-focused, interactive websites hosted by physician-investigators with expertise in PF. All data generated by reader-participants for approximately 10 months were downloaded and then analyzed using qualitative content analysis methods. Results PF experts posted 38 blog entries and reader-participants posted 40 forum entries. Blogs received 363 responses, and forum entries received 108 responses from reader-participants. Reader-participants primarily used the three websites to seek information from or offer a contribution to the PF community. Information was sought about PF symptoms, diagnosis, prognosis, treatments, research, pathophysiology, and disease origin; reader-participants also made requests for new posts and pleas for research and sought clarification on existing content. Contributions included personal narratives about experiences with PF, descriptions of activities or behaviors found to be helpful with PF symptoms, resources or information about PF, and supportive comments to other PF sufferers. Conclusions PF patients and their loved ones engage the Web 2.0 environment at these PF-focused sites to satisfy their needs to better understand PF and its impacts and to support others facing similar challenges. Clinicians may find it beneficial to encourage PF patients’ involvement in internet forums that foster dynamic, bi-directional information sharing