A Phylogenetic Analysis of the African Plant Genus Palisota (family Commelinaceae) based on Chloroplast DNA Sequences

The plant genus Palisota (family Commelinaceae, or spiderwort family) consists of approximately 20 species and is distributed throughout the forests of tropical Africa. The genus exhibits several unusual morphological characteristics, and as a result has been difficult to classify based on morphology. Molecular phylogenetic studies have placed it near the base of Commelinaceae, but the exact placement of Palisota within the family is not clear. As the African continent has become more arid in recent geological times, the forests have receded, reducing the habitat for Palisota species and potentially impacting speciation and extinction rates within the genus. The goal of this study is to sequence the chloroplast-encoded gene rbcL in several additional species of Palisota and its relatives in order to: 1) determine the phylogenetic relationship of the genus with respect to other members of Commelinaceae; 2) evaluate phylogenentic relationships among species of Palisota; and 3) infer relative speciation/extinction rates within the genus. Additionally, we are exploring the use of other molecular regions for phylogenetic analysis with the genus

Subtribal Relationships in Tribe Tradescantieae (Commelinaceae)Based on Molecular and Morphological Data

Tribe Tradescantieae (Commelinaceae) consists of seven subtribes and 25 genera. Previous attempts to evaluate phylogenetic relationships within the group using morphology or the chloroplast-encoded rbcL have either been highly homoplasious (morphology) or provided only weak support for subtribal relationships due to insufficient variability (rbcL). In this study, phylogenetic analysis of nucleotide sequence data from the chloroplast-encoded ndhF and rbcL genes, as well as 47 morphological and anatomical characters, were used to evaluate relationships within and among the subtribes of Tradescantieae. The addition of ndhF resulted in a more highly resolved phylogeny and greater bootstrap and decay values than were obtained by rbcL alone or rbcL and morphology. The analyses suggest the following: (1) subtribes Coleotrypinae, Cyanotinae, and Tradescantiinae (with the addition of Elasis) are monophyletic; (2) subtribe Thyrsantheminae is polyphyletic; and (3) subtribe Dichorisandrinae is polyphyletic. Members of Dichorisandrinae are united into two clades (Dichorisandra and Siderasis; Cochliostema, Geogenanthus, and Plowmanianthus) whose relationships are more clearly resolved. The position of Old World subtribes Cyanotinae and Coleotrypinae, nested within New World taxa suggested by rbcL studies, are supported by the addition of ndhF data

Neurogenic inflammation after traumatic brain injury and its potentiation of classical inflammation

Background: The neuroinflammatory response following traumatic brain injury (TBI) is known to be a key secondary injury factor that can drive ongoing neuronal injury. Despite this, treatments that have targeted aspects of the inflammatory pathway have not shown significant efficacy in clinical trials. Main body: We suggest that this may be because classical inflammation only represents part of the story, with activation of neurogenic inflammation potentially one of the key initiating inflammatory events following TBI. Indeed, evidence suggests that the transient receptor potential cation channels (TRP channels), TRPV1 and TRPA1, are polymodal receptors that are activated by a variety of stimuli associated with TBI, including mechanical shear stress, leading to the release of neuropeptides such as substance P (SP). SP augments many aspects of the classical inflammatory response via activation of microglia and astrocytes, degranulation of mast cells, and promoting leukocyte migration. Furthermore, SP may initiate the earliest changes seen in blood-brain barrier (BBB) permeability, namely the increased transcellular transport of plasma proteins via activation of caveolae. This is in line with reports that alterations in transcellular transport are seen first following TBI, prior to decreases in expression of tight-junction proteins such as claudin-5 and occludin. Indeed, the receptor for SP, the tachykinin NK1 receptor, is found in caveolae and its activation following TBI may allow influx of albumin and other plasma proteins which directly augment the inflammatory response by activating astrocytes and microglia. Conclusions: As such, the neurogenic inflammatory response can exacerbate classical inflammation via a positive feedback loop, with classical inflammatory mediators such as bradykinin and prostaglandins then further stimulating TRP receptors. Accordingly, complete inhibition of neuroinflammation following TBI may require the inhibition of both classical and neurogenic inflammatory pathways.Frances Corrigan, Kimberley A. Mander, Anna V. Leonard and Robert Vin

The Space Physics Environment Data Analysis System (SPEDAS)

With the advent of the Heliophysics/Geospace System Observatory (H/GSO), a complement of multi-spacecraft missions and ground-based observatories to study the space environment, data retrieval, analysis, and visualization of space physics data can be daunting. The Space Physics Environment Data Analysis System (SPEDAS), a grass-roots software development platform (www.spedas.org), is now officially supported by NASA Heliophysics as part of its data environment infrastructure. It serves more than a dozen space missions and ground observatories and can integrate the full complement of past and upcoming space physics missions with minimal resources, following clear, simple, and well-proven guidelines. Free, modular and configurable to the needs of individual missions, it works in both command-line (ideal for experienced users) and Graphical User Interface (GUI) mode (reducing the learning curve for first-time users). Both options have “crib-sheets,” user-command sequences in ASCII format that can facilitate record-and-repeat actions, especially for complex operations and plotting. Crib-sheets enhance scientific interactions, as users can move rapidly and accurately from exchanges of technical information on data processing to efficient discussions regarding data interpretation and science. SPEDAS can readily query and ingest all International Solar Terrestrial Physics (ISTP)-compatible products from the Space Physics Data Facility (SPDF), enabling access to a vast collection of historic and current mission data. The planned incorporation of Heliophysics Application Programmer’s Interface (HAPI) standards will facilitate data ingestion from distributed datasets that adhere to these standards. Although SPEDAS is currently Interactive Data Language (IDL)-based (and interfaces to Java-based tools such as Autoplot), efforts are under-way to expand it further to work with python (first as an interface tool and potentially even receiving an under-the-hood replacement). We review the SPEDAS development history, goals, and current implementation. We explain its “modes of use” with examples geared for users and outline its technical implementation and requirements with software developers in mind. We also describe SPEDAS personnel and software management, interfaces with other organizations, resources and support structure available to the community, and future development plans

New Species of Commelina (Commelinaceae) from East and South-Central Africa

Volume: 18Start Page: 469End Page: 47

Pollia Thunb. (Commelinaceae): The First Generic Record From the New World

Volume: 65Start Page: 676End Page: 68

New Species of Tricarpelema (Commelinaceae) from Africa and Asia, Including the First Record of the Genus from Africa and a Synopsis of the Genus

Volume: 17Start Page: 160End Page: 16

Floral Attraction and Floral Hairs in the Commelinaceae

Volume: 79Start Page: 46End Page: 5