High resolution measurements of the switching current in a Josephson tunnel junction: Thermal activation and macroscopic quantum tunneling

We have developed a scheme for a high resolution measurement of the switching current distribution of a current biased Josephson tunnel junction using a timing technique. The measurement setup is implemented such that the digital control and read-out electronics are optically decoupled from the analog bias electronics attached to the sample. We have successfully used this technique to measure the thermal activation and the macroscopic quantum tunneling of the phase in a small Josephson tunnel junction with a high experimental resolution. This technique may be employed to characterize current-biased Josephson tunnel junctions for applications in quantum information processing.Comment: 10 pages, 8 figures, 1 tabl

Dilation of the Giant Vortex State in a Mesoscopic Superconducting Loop

We have experimentally investigated the magnetisation of a mesoscopic aluminum loop at temperatures well below the superconducting transition temperature $T_{c}$. The flux quantisation of the superconducting loop was investigated with a $\mu$-Hall magnetometer in magnetic field intensities between $\pm 100 {Gauss}$. The magnetic field intensity periodicity observed in the magnetization measurements is expected to take integer values of the superconducting flux quanta $\Phi_{0}=h/2e$. A closer inspection of the periodicity, however, reveal a sub flux quantum shift. This fine structure we interpret as a consequence of a so called giant vortex state nucleating towards either the inner or the outer side of the loop. These findings are in agreement with recent theoretical reports.Comment: 12 pages, 5 figures. Accepted for publication in Phys. Rev.

In the light of directed evolution: Pathways of adaptive protein evolution

Directed evolution is a widely-used engineering strategy for improving the stabilities or biochemical functions of proteins by repeated rounds of mutation and selection. These experiments offer empirical lessons about how proteins evolve in the face of clearly-defined laboratory selection pressures. Directed evolution has revealed that single amino acid mutations can enhance properties such as catalytic activity or stability and that adaptation can often occur through pathways consisting of sequential beneficial mutations. When there are no single mutations that improve a particular protein property experiments always find a wealth of mutations that are neutral with respect to the laboratory-defined measure of fitness. These neutral mutations can open new adaptive pathways by at least 2 different mechanisms. Functionally-neutral mutations can enhance a protein's stability, thereby increasing its tolerance for subsequent functionally beneficial but destabilizing mutations. They can also lead to changes in “promiscuous” functions that are not currently under selective pressure, but can subsequently become the starting points for the adaptive evolution of new functions. These lessons about the coupling between adaptive and neutral protein evolution in the laboratory offer insight into the evolution of proteins in nature

An Evening Sector Ps 6 - Omega Band Event

Article draft. Author list indicative and roughly corresponds to amount of contribution to the article to date.Abstract. Ps 6 magnetic disturbances and associated optical forms known as omega bands are usually associated with the morning sector. Some evidence for similar phenomenology in the evening sector has been presented by Solovyev et al. (1999). We confirm and extend those results with high time resolution magnetic and imaging observations from Athabasca University Geophysical Observatory for an event that took place on July 27, 2003, along with conjugate hemisphere imaging from the Polar spacecraft. The observed signatures indicate sunward drift (westward in the evening sector). Magnetic perturbations feature negative Y and transitional Z indicating westward passage of poleward equivalent currents overhead. As has been suggested by Connors et al. (2003) to be often the case for morning sector Ps 6/omega bands, initiation of the evening sector event coincided with substorm onset. From optical and magnetic data we obtain consistent results for the drift rate of the forms, which changed during the event. An inner magnetospheric source is suggested, with triggering of the onset by an increase in solar wind speed

Thermal effects on atomic friction

We model friction acting on the tip of an atomic force microscope as it is dragged across a surface at non-zero temperatures. We find that stick-slip motion occurs and that the average frictional force follows $|\ln v|^{2/3}$, where $v$ is the tip velocity. This compares well to recent experimental work (Gnecco et al, PRL 84, 1172), permitting the quantitative extraction of all microscopic parameters. We calculate the scaled form of the average frictional force's dependence on both temperature and tip speed as well as the form of the friction-force distribution function.Comment: Accepted for publication, Physical Review Letter

Metastability in Josephson transmission lines

Thermal activation and macroscopic quantum tunneling in current-biased discrete Josephson transmission lines are studied theoretically. The degrees of freedom under consideration are the phases across the junctions which are coupled to each other via the inductances of the system. The resistively shunted junctions that we investigate constitute a system of N interacting degrees of freedom with an overdamped dynamics. We calculate the decay rate within exponential accuracy as a function of temperature and current. Slightly below the critical current, the decay from the metastable state occurs via a unique ("rigid") saddlepoint solution of the Euclidean action describing the simultaneous decay of the phases in all the junctions. When the current is reduced, a crossover to a regime takes place, where the decay occurs via an "elastic" saddlepoint solution and the phases across the junctions leave the metastable state one after another. This leads to an increased decay rate compared with the rigid case both in the thermal and the quantum regime. The rigid-to-elastic crossover can be sharp or smooth analogous to first- or second- order phase transitions, respectively. The various regimes are summarized in a current-temperature decay diagram.Comment: 11 pages, RevTeX, 3 PS-figures, revised versio

Near-field optical power transmission of dipole nano-antennas

Nano-antennas in functional plasmonic applications require high near-field optical power transmission. In this study, a model is developed to compute the near-field optical power transmission in the vicinity of a nano-antenna. To increase the near-field optical power transmission from a nano-antenna, a tightly focused beam of light is utilized to illuminate a metallic nano-antenna. The modeling and simulation of these structures is performed using 3-D finite element method based full-wave solutions of Maxwell’s equations. Using the optical power transmission model, the interaction of a focused beam of light with plasmonic nanoantennas is investigated. In addition, the tightly focused beam of light is passed through a band-pass filter to identify the effect of various regions of the angular spectrum to the near-field radiation of a dipole nano-antenna. An extensive parametric study is performed to quantify the effects of various parameters on the transmission efficiency of dipole nano-antennas, including length, thickness, width, and the composition of the antenna, as well as the wavelength and half-beam angle of incident light. An optimal dipole nanoantenna geometry is identified based on the parameter studies in this work. In addition, the results of this study show the interaction of the optimized dipole nano-antenna with a magnetic recording medium when it is illuminated with a focused beam of light

Crossover from thermal hopping to quantum tunneling in Mn_{12}Ac

The crossover from thermal hopping to quantum tunneling is studied. We show that the decay rate $\Gamma$ with dissipation can accurately be determined near the crossover temperature. Besides considering the Wentzel-Kramers-Brillouin (WKB) exponent, we also calculate contribution of the fluctuation modes around the saddle point and give an extended account of a previous study of crossover region. We deal with two dangerous fluctuation modes whose contribution can't be calculated by the steepest descent method and show that higher order couplings between the two dangerous modes need to be taken into considerations. At last the crossover from thermal hopping to quantum tunneling in the molecular magnet Mn_{12}Ac is studied.Comment: 10 pages, 3 figure

Sonoluminescence as a QED vacuum effect. I: The Physical Scenario

Several years ago Schwinger proposed a physical mechanism for sonoluminescence in terms of changes in the properties of the quantum-electrodynamic (QED) vacuum state. This mechanism is most often phrased in terms of changes in the Casimir Energy: changes in the distribution of zero-point energies and has recently been the subject of considerable controversy. The present paper further develops this quantum-vacuum approach to sonoluminescence: We calculate Bogolubov coefficients relating the QED vacuum states in the presence of a homogeneous medium of changing dielectric constant. In this way we derive an estimate for the spectrum, number of photons, and total energy emitted. We emphasize the importance of rapid spatio-temporal changes in refractive indices, and the delicate sensitivity of the emitted radiation to the precise dependence of the refractive index as a function of wavenumber, pressure, temperature, and noble gas admixture. Although the physics of the dynamical Casimir effect is a universal phenomenon of QED, specific experimental features are encoded in the condensed matter physics controlling the details of the refractive index. This calculation places rather tight constraints on the possibility of using the dynamical Casimir effect as an explanation for sonoluminescence, and we are hopeful that this scenario will soon be amenable to direct experimental probes. In a companion paper we discuss the technical complications due to finite-size effects, but for reasons of clarity in this paper we confine attention to bulk effects.Comment: 25 pages, LaTeX 209, ReV-TeX 3.2, eight figures. Minor revisions: Typos fixed, references updated, minor changes in numerical estimates, minor changes in some figure

Bidirectional lipid droplet velocities are controlled by differential binding strengths of HCV Core DII protein

Host cell lipid droplets (LD) are essential in the hepatitis C virus (HCV) life cycle and are targeted by the viral capsid core protein. Core-coated LDs accumulate in the perinuclear region and facilitate viral particle assembly, but it is unclear how mobility of these LDs is directed by core. Herein we used two-photon fluorescence, differential interference contrast imaging, and coherent anti-Stokes Raman scattering microscopies, to reveal novel core-mediated changes to LD dynamics. Expression of core protein’s lipid binding domain II (DII-core) induced slower LD speeds, but did not affect directionality of movement on microtubules. Modulating the LD binding strength of DII-core further impacted LD mobility, revealing the temporal effects of LD-bound DII-core. These results for DII-core coated LDs support a model for core-mediated LD localization that involves core slowing down the rate of movement of LDs until localization at the perinuclear region is accomplished where LD movement ceases. The guided localization of LDs by HCV core protein not only is essential to the viral life cycle but also poses an interesting target for the development of antiviral strategies against HCV