282 research outputs found
DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein
[EN] Single-stranded DNA-binding proteins (SSBs) play a key role in genome maintenance, binding and organizing single-stranded DNA (ssDNA) intermediates. Multimeric SSBs, such as the human mitochondrial SSB (HmtSSB), present multiple sites to interact with ssDNA, which has been shown in vitro to enable them to bind a variable number of single-stranded nucleotides depending on the salt and protein concentration. It has long been suggested that different binding modes might be used selectively for different functions. To study this possibility, we used optical tweezers to determine and compare the structure and energetics of long, individual HmtSSB¿DNA complexes assembled on preformed ssDNA and on ssDNA generated gradually during `in situ¿ DNA synthesis. We show that HmtSSB binds to preformed ss-DNA in two major modes, depending on salt and protein concentration. However, when protein binding was coupled to strand-displacement DNA synthesis, only one of the two binding modes was observed under all experimental conditions. Our results reveal a key role for the gradual generation of ssDNA in modulating the binding mode of a multimeric SSB protein and consequently, in generating the appropriate nucleoprotein structure for DNA synthetic reactions required for genome maintenance.We are grateful to Prof. M. Salas laboratory (CBMSO-CSIC) for generously providing the Phi29 DNA polymerase and to Juan P. García Villaluenga (UCM) for useful discussions. Spanish Ministry of Economy and Competitiveness [MAT2015-71806-R to J.R.A-G, FIS2010-17440, FIS2015-67765-R to F.J.C., BFU2012-31825, BFU2015-63714-R to B.I.]; Spanish Ministry of Education, Culture and Sport [FPU13/02934 to J.J., FPU13/02826 to E.B-H.]; National Institutes of Health [GM45925 to L.S.K.]; University of Tampere (to G.L.C.); Programa de Financiacion Universidad Complutense de Madrid-Santander Universidades [CT45/15-CT46/15 to F.C.]. Funding for open access charge: Spanish Ministry of Economy and Competitiveness [BFU2015-63714-R].Morin, J.; Cerrón, F.; Jarillo, J.; Beltran-Heredia, E.; Ciesielski, G.; Arias-Gonzalez, JR.; Kaguni, L.... (2017). DNA synthesis determines the binding mode of the human mitochondrial single-stranded DNA-binding protein. Nucleic Acids Research. 45(12):7237-7248. https://doi.org/10.1093/nar/gkx395S723772484512Shereda, R. D., Kozlov, A. G., Lohman, T. M., Cox, M. M., & Keck, J. L. (2008). 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Minimal lepton flavor violating realizations of minimal seesaw models
We study the implications of the global U(1)R symmetry present in minimal
lepton flavor violating implementations of the seesaw mechanism for neutrino
masses. In the context of minimal type I seesaw scenarios with a slightly
broken U(1)R, we show that, depending on the R-charge assignments, two classes
of generic models can be identified. Models where the right-handed neutrino
masses and the lepton number breaking scale are decoupled, and models where the
parameters that slightly break the U(1)R induce a suppression in the light
neutrino mass matrix. We show that within the first class of models,
contributions of right-handed neutrinos to charged lepton flavor violating
processes are severely suppressed. Within the second class of models we study
the charged lepton flavor violating phenomenology in detail, focusing on mu to
e gamma, mu to 3e and mu to e conversion in nuclei. We show that sizable
contributions to these processes are naturally obtained for right-handed
neutrino masses at the TeV scale. We then discuss the interplay with the
effects of the right-handed neutrino interactions on primordial B - L
asymmetries, finding that sizable right-handed neutrino contributions to
charged lepton flavor violating processes are incompatible with the requirement
of generating (or even preserving preexisting) B - L asymmetries consistent
with the observed baryon asymmetry of the Universe.Comment: 21 pages, 4 figures; version 2: Discussion on possible generic models
extended, typos corrected, references added. Version matches publication in
JHE
Calibration and in orbit performance of the reflection grating spectrometer onboard XMM-Newton
Context: XMM-Newton was launched on 10 December 1999 and has been operational
since early 2000. One of the instruments onboard XMM-Newton is the reflection
grating spectrometer (RGS). Two identical RGS instruments are available, with
each RGS combining a reflection grating assembly (RGA) and a camera with CCDs
to record the spectra. Aims: We describe the calibration and in-orbit
performance of the RGS instrument. By combining the preflight calibration with
appropriate inflight calibration data including the changes in detector
performance over time, we aim at profound knowledge about the accuracy in the
calibration. This will be crucial for any correct scientific interpretation of
spectral features for a wide variety of objects. Methods: Ground calibrations
alone are not able to fully characterize the instrument. Dedicated inflight
measurements and constant monitoring are essential for a full understanding of
the instrument and the variations of the instrument response over time.
Physical models of the instrument are tuned to agree with calibration
measurements and are the basis from which the actual instrument response can be
interpolated over the full parameter space. Results: Uncertainties in the
instrument response have been reduced to < 10% for the effective area and < 6
mA for the wavelength scale (in the range from 8 A to 34 A. The remaining
systematic uncertainty in the detection of weak absorption features has been
estimated to be 1.5%. Conclusions: Based on a large set of inflight calibration
data and comparison with other instruments onboard XMM-Newton, the calibration
accuracy of the RGS instrument has been improved considerably over the
preflight calibrations.Comment: Accepted for publication in Astronomy and Astrophysics, Astronomical
instrumentation sectio
Dynamical R-parity Breaking at the LHC
In a class of extensions of the minimal supersymmetric standard model with
(B-L)/left-right symmetry that explains the neutrino masses, breaking R-parity
symmetry is an essential and dynamical requirement for successful gauge
symmetry breaking. Two consequences of these models are: (i) a new kind of
R-parity breaking interaction that protects proton stability but adds new
contributions to neutrinoless double beta decay and (ii) an upper bound on the
extra gauge and parity symmetry breaking scale which is within the large hadron
collider (LHC) energy range. We point out that an important prediction of such
theories is a potentially large mixing between the right-handed charged lepton
() and the superpartner of the right-handed gauge boson (), which leads to a brand new class of R-parity violating interactions of
type and \widetilde{d^c}^\dagger\u^c
e^c. We analyze the relevant constraints on the sparticle mass spectrum and
the LHC signatures for the case with smuon/stau NLSP and gravitino LSP. We note
the "smoking gun" signals for such models to be lepton flavor/number violating
processes: (or ) and
(or ) without
significant missing energy. The predicted multi-lepton final states and the
flavor structure make the model be distinguishable even in the early running of
the LHC.Comment: 30 pages, 13 figures, 6 tables, reference adde
Muon conversion to electron in nuclei in type-I seesaw models
We compute the muon to electron conversion in the type-I seesaw model, as a
function of the right-handed neutrino mixings and masses. The results are
compared with previous computations in the literature. We determine the
definite predictions resulting for the ratios between the muon to electron
conversion rate for a given nucleus and the rate of two other processes which
also involve a mu-e flavour transition: mu -> e gamma and mu -> eee. For a
quasi-degenerate mass spectrum of right-handed neutrino masses -which is the
most natural scenario leading to observable rates- those ratios depend only on
the seesaw mass scale, offering a quite interesting testing ground. In the case
of sterile neutrinos heavier than the electroweak scale, these ratios vanish
typically for a mass scale of order a few TeV. Furthermore, the analysis
performed here is also valid down to very light masses. It turns out that
planned mu -> e conversion experiments would be sensitive to masses as low as 2
MeV. Taking into account other experimental constraints, we show that future mu
-> e conversion experiments will be fully relevant to detect or constrain
sterile neutrino scenarios in the 2 GeV-1000 TeV mass range.Comment: 32 pages 14 figures, references added and some minor precisions;
results unchange
Reconstructing Seesaws
We explore some aspects of "reconstructing" the heavy singlet sector of
supersymmetric type I seesaw models, for two, three or four singlets. We work
in the limit where one light neutrino is massless. In an ideal world, where
selected coefficients of the TeV-scale effective Lagrangian could be measured
with arbitrary accuracy, the two-singlet case can be reconstructed, two three
or more singlets can be differentiated, and an inverse seesaw with four
singlets can be reconstructed. In a more realistic world, we estimate \ell_\a
\to \ell_\b \gamma expectations with a "Minimal-Flavour-Violation-like"
ansatz, which gives a relation between ratios of the three branching ratios.
The two singlet model predicts a discrete set of ratios.Comment: 14 page
Rejection of the hypothesis that Markarian 501 TeV photons are pure Bose-Einstein condensates
The energy spectrum of the Blazar type galaxy Markarian 501 (Mrk 501) as
measured by the High-Energy-Gamma-Ray Astronomy (HEGRA) air Cerenkov telescopes
extends beyond 16 TeV and constitutes the most energetic photons observed from
an extragalactic object. A fraction of the emitted spectrum is possibly
absorbed in interactions with low energy photons of the diffuse extragalactic
infrared radiation, which in turn offers the unique possibility to measure the
diffuse infrared radiation density by TeV spectroscopy. The upper limit on the
density of the extragalactic infrared radiation derived from the TeV
observations imposes constraints on models of galaxy formation and stellar
evolution. One of the recently published ideas to overcome severe absorption of
TeV photons is based upon the assumption that sources like Mrk 501 could
produce Bose-Einstein condensates of coherent photons. The condensates would
have a higher survival probability during the transport in the diffuse
radiation field and could mimic TeV air shower events. The powerful
stereoscopic technique of the HEGRA air Cerenkov telescopes allows to test this
hypothesis by reconstructing the penetration depths of TeV air shower events:
Air showers initiated by Bose-Einstein condensates are expected to reach the
maximum of the shower development in the atmosphere earlier than single photon
events. By comparing the energy-dependent penetration depths of TeV photons
from Mrk 501 with those from the TeV standard-candle Crab Nebula and simulated
air shower events, we can reject the hypothesis that TeV photons from Mrk 501
are pure Bose-Einstein condensates.Comment: 9 pages, 2 figures, published by ApJ Letters, revised version
(simulation results added
The Energy Spectrum of TeV Gamma-Rays from the Crab Nebula as measured by the HEGRA system of imaging air Cherenkov telescopes
The Crab Nebula has been observed by the HEGRA (High-Energy Gamma-Ray
Astronomy) stereoscopic system of imaging air Cherenkov telescopes (IACTs) for
a total of about 200 hrs during two observational campaigns: from September
1997 to March 1998 and from August 1998 to April 1999. The recent detailed
studies of system performance give an energy threshold and an energy resolution
for gamma-rays of 500 GeV and ~ 18%, respectively. The Crab energy spectrum was
measured with the HEGRA IACT system in a very broad energy range up to 20 TeV,
using observations at zenith angles up to 65 degrees. The Crab data can be
fitted in the energy range from 1 to 20 TeV by a simple power-law, which yields
dJg/dE = (2.79+/-0.02 +/- 0.5) 10^{-7} E^{-2.59 +/- 0.03 +/- 0.05}, ph m^{-2}
s^{-1} TeV^{-1} The Crab Nebula energy spectrum, as measured with the HEGRA
IACT system, agrees within 15% in the absolute scale and within 0.1 units in
the power law index with the latest measurements by the Whipple, CANGAROO and
CAT groups, consistent within the statistical and systematic errors quoted by
the experiments. The pure power-law spectrum of TeV gamma-rays from the Crab
Nebula constrains the physics parameters of the nebula environment as well as
the models of photon emission.Comment: to appear in ApJ, 29 pages, 6 figure
- …