Association Analysis in Soybean

Association analysis is a new approach to identify the location of gene(s)/allele(s) of interest. There are a number of factors determining the feasibility of whole-genome association analysis which include the level of linkage disequilibrium (LD) and the magnitude of population structure in a population. The goal of this study was to evaluate the success of whole-genome association analysis in soybean germplasm accessions using DNA markers across the whole genome. Firstly, the extent of LD and the presence of population structure were estimated. Secondly, whole-genome association analysis was performed to detect the location of the allele/gene controlling flower color, pubescence color, and seed protein quantitative trait loci (QTLs) in 319 soybean [Glycine max (L.) Merr.] germplasm accessions. The soybean germplasm accessions had a relatively low level of LD which declined very rapidly to 0.8 in less than 4 Kbp as indicated by r2 as well as highly diverse population structure. Despite the low LD and the presence of high population structure, whole-genome case-control analysis successfully detected the 65 bp insertion in the GmF3'5'H (GenBank acc. AY117551) gene controlling purple vs. white flower color, as well as a single base deletion in the F3'H (GenBank acc. AB191404) gene controlling tawny vs. gray pubescence color. However, there were 28 gray pubescence lines that did not contain the deletion suggesting that there is a second mutation determining the pubescence color alteration. In the case of seed protein QTL, whole-genome regression analysis detected one of four previously reported seed protein QTLs which reside on linkage group (LG) E and a new seed protein QTL on LG K. The detection of three other previously reported seed protein QTLs on LGs A1, I and M was not successful. It is unclear why association analysis was not successful in the detection of the three previously reported QTLs. However, a number of reasons including incomplete adjustment for population structure, lack of statistical power, an inadequate number of genetic markers in light of the low level of LD, and the power of association analysis to detect alleles with relatively modest genetic effects are suggested as possible reasons

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Principal factors that determine the extension of detection range in molecular beacon aptamer/conjugated polyelectrolyte bioassays.

A strategy to extend the detection range of weakly-binding targets is reported that takes advantage of fluorescence resonance energy transfer (FRET)-based bioassays based on molecular beacon aptamers (MBAs) and cationic conjugated polyelectrolytes (CPEs). In comparison to other aptamer-target pairs, the aptamer-based adenosine triphosphate (ATP) detection assays are limited by the relatively weak binding between the two partners. In response, a series of MBAs were designed that have different stem stabilities while keeping the constant ATP-specific aptamer sequence in the loop part. The MBAs are labeled with a fluorophore and a quencher at both termini. In the absence of ATP, the hairpin MBAs can be opened by CPEs via a combination of electrostatic and hydrophobic interactions, showing a FRET-sensitized fluorophore signal. In the presence of ATP, the aptamer forms a G-quadruplex and the FRET signal decreases due to tighter contact between the fluorophore and quencher in the ATP/MBA/CPE triplex structure. The FRET-sensitized signal is inversely proportional to [ATP]. The extension of the detection range is determined by the competition between opening of the ATP/MBA G-quadruplex by CPEs and the composite influence by ATP/aptamer binding and the stem interactions. With increasing stem stability, the weak binding of ATP and its aptamer is successfully compensated to show the resistance to disruption by CPEs, resulting in a substantially broadened detection range (from millimolar up to nanomolar concentrations) and a remarkably improved limit of detection. From a general perspective, this strategy has the potential to be extended to other chemical- and biological-assays with low target binding affinity

Bright color optical switching device by polymer network liquid crystal with a specular reflector

The color optical switching device by polymer network liquid crystal (PNLC) with color filter on a specular reflector shows excellent performance; white reflectance of 22%, color gamut of 32%, and contrast ratio up to 50:1 in reflective mode measurement. The view-angle dependence of the reflectance can be adjusted by changing the PNLC thickness. The color chromaticity shown by the device is close to the limit value of color filters, and its value nearly remains with respect to the operating voltage. These optical properties of the device can be explained from the prediction based on multiple interactions between the light and the droplets of liquid crystal. The high reflectance, vivid color image, and moderate responds time allow the PNLC device to drive good color moving image. It can widely extend the applications of the reflective device. © 2011 Optical Society of America.1

Orthogonality properties of transverse eigenmodes of phase conjugate optical resonators

The orthogonality properties of the transverse eigenmodes of optical resonators which have phase conjugate mirrors at both ends are derived. As in conventional resonators and also resonators with only one phase conjugate mirror, it is shown that the transverse eigenmodes are essentially biorthogonal, a relation which is satisfied between the set of modes propagating in one direction around the resonator and the adjoint set of modes propagating in the reverse direction

Immune-enhancing screening of fourteen plants on murine macrophage RAW 264.7 cells

Purpose: To investigate the potential immune-enhancing effects of fourteen natural plant extracts on mouse macrophage RAW 264.7 cells.Methods: Fourteen plant extracts from 7 different plants were tested on RAW 264.7 cells to determine their immunostimulant activities. Methylthiazolydiphenyltetrazolium bromide (MTT) and Griess assays were performed to evaluate cell viability and nitric oxide (NO) production, respectively. Then, immune related proteins were measured by western blot analysis, while cytokines and phagocytic activity were determined by enzyme-linked immunosorbent assay (ELISA) method.Results: Among the 14 plant extracts, the hot water extract of Agastache rugose was selected based on the screening results on NO production. The hot water extract of A. rugose significantly increased NO production in a concentration-dependent manner without any cytotoxicity. In addition, the expression levels of proteins (iNOS and COX-2) and cytokines (TNF-α, IL-1β, IL-6 and IL-12) closely related to immune reaction were also significantly upregulated. Furthermore, phagocytic activity of RAW 264.7 cells significantly increased following treatment with A. rugosa.Conclusion: The hot water extract of A. rugosa exhibits significant immune-stimulant activity. Therefore, A. rugosa can be used as a natural resource for immune enhancement or dietary supplement.Keywords: Immune enhancing activity, Macrophage polarization, Natural plant extracts, Agastache rugosa, RAW 264.

Health effects from exposure to dental diagnostic X-ray

The purpose of this review is to summarize the results of studies on of the association between exposure to dental X-rays and health risk. To perform the systematic review, We searched the PUBMED, EMBASE, and MEDLINE databases for papers published before December 15, 2016. A total of 2 158 studies, excluding duplicate studies, were found. Two reviewers independently evaluated the eligibility of each study. The final 21 studies were selected after application of exclusion criteria. In terms of health outcomes, there were 10 studies about brain tumors, 5 about thyroid cancer, 3 about tumors of head and neck areas, and 3 related to systemic health. In brain tumor studies, the association between dental X-ray exposure and meningioma was statistically significant in 5 of the 7 studies. In 4 of the 5 thyroid-related studies, there was a significant correlation with dental diagnostic X-rays. In studies on head and neck areas, tumors included laryngeal, parotid gland, and salivary gland cancers. There was also a statistically significant correlation between full-mouth X-rays and salivary gland cancer, but not parotid gland cancer. Health outcomes such as leukemia, low birth weight, cataracts, and thumb carcinomas were also reported. In a few studies examining health effects related to dental X-ray exposure, possibly increased risks of meningioma and thyroid cancer were suggested. More studies with a large population and prospective design are needed to elaborate these associations further