The histone methyltransferase SET8 is required for S-phase progression

Chromatin structure and function is influenced by histone posttranslational modifications. SET8 (also known as PR-Set7 and SETD8) is a histone methyltransferase that monomethylates histonfe H4-K20. However, a function for SET8 in mammalian cell proliferation has not been determined. We show that small interfering RNA inhibition of SET8 expression leads to decreased cell proliferation and accumulation of cells in S phase. This is accompanied by DNA double-strand break (DSB) induction and recruitment of the DNA repair proteins replication protein A, Rad51, and 53BP1 to damaged regions. SET8 depletion causes DNA damage specifically during replication, which induces a Chk1-mediated S-phase checkpoint. Furthermore, we find that SET8 interacts with proliferating cell nuclear antigen through a conserved motif, and SET8 is required for DNA replication fork progression. Finally, codepletion of Rad51, an important homologous recombination repair protein, abrogates the DNA damage after SET8 depletion. Overall, we show that SET8 is essential for genomic stability in mammalian cells and that decreased expression of SET8 results in DNA damage and Chk1-dependent S-phase arrest

Unbiased prediction errors for partial least squares regression models: Choosing a representative error estimator for process monitoring

Partial least squares (PLS) regression is widely used to predict chemical analytes from spectroscopic data, thus reducing the need for expensive and time-consuming wet chemical reference analysis in industrial process monitoring. However, predictions via PLS by definition carry sample-specific errors, and estimation of these errors is essential for correct interpretation of results. To increase trust in PLS regression-based predictions, reliable prediction error estimates must be reported. This can be achieved by determining realistic sample-specific prediction errors using an unbiased mean squared prediction error estimate. This work provides a guide for estimating sample-specific prediction errors, showing the importance of choosing an appropriate error estimator prior to deploying PLS models for industrial applications. We reviewed recent and established methods for estimating the sample-specific prediction error and test them through simulation studies. The methods were subsequently applied for estimating prediction errors in two real-life datasets from the food ingredients industry, where near-infrared spectroscopy was used to quantify i) urea in process water and ii) individual protein concentrations in ultrafiltration retentates from a protein fractionation process. Both the simulations and real data examples showed that the mean squared error of calibration is always a downward biased estimator. Although leave-one-out-cross-validation performed surprisingly well in the data analysed in this work, this paper demonstrated that the appropriate choice of error estimator requires the user to make an informed, data-centered decision.publishedVersio

SET8 is degraded via PCNA-coupled CRL4(CDT2) ubiquitylation in S phase and after UV irradiation

Degradation of the histone H4 methyltransferase SET8, which regulates chromosome compaction and genomic integrity, is regulated by the CRL4(CDT2) ubiquitin ligase to facilitate DNA replication and repair

Hexagonal and Square Flux Line Lattices in CeCoIn5

Using small-angle neutron scattering, we have imaged the magnetic flux line lattice (FLL) in the d-wave heavy-fermion superconductor CeCoIn5. At low fields we find a hexagonal FLL. Around 0.6 T this undergoes what is very likely a first-order transition to square symmetry, with the nearest neighbors oriented along the gap node directions. This orientation of the square FLL is consistent with theoretical predictions based on the d-wave order parameter symmetry.Comment: 4 pages, 3 figs (1 color

When research melts down

Med lukningen af DR3-reaktoren på Risø mister Danmark sit eneste virkeligt store forskningsanlæg, som gennem fire årtier har sat dansk fysik og materialeforskning på verdenskortet. Danske, svenske og norske forskere forsøger nu at skaffe en større og mere avanceret europæisk neutronfacilitet til Øresundsregionen

Hexagonal and Square Flux Line Lattices in CeCoIn5

Using small-angle neutron scattering, we have imaged the magnetic flux line lattice (FLL) in the d-wave heavy-fermion superconductor CeCoIn5. At low fields we find a hexagonal FLL. Around 0.6 T this undergoes what is most likely a first-order transition to square symmetry, with the nearest neighbors oriented along the gap node directions. This orientation of the square FLL is consistent with theoretical predictions based on the d-wave order parameter symmetry.This article is from Physical Review Letters 90 (2003): 187001, doi:10.1103/PhysRevLett.90.187001. Posted with permission.</p