Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors.

Marine sponge holobionts, defined as filter-feeding sponge hosts together with their associated microbiomes, are prolific sources of natural products. The inventory of natural products that have been isolated from marine sponges is extensive. Here, using untargeted mass spectrometry, we demonstrate that sponges harbor a far greater diversity of low-abundance natural products that have evaded discovery. While these low-abundance natural products may not be feasible to isolate, insights into their chemical structures can be gleaned by careful curation of mass fragmentation spectra. Sponges are also some of the most complex, multi-organismal holobiont communities in the oceans. We overlay sponge metabolomes with their microbiome structures and detailed metagenomic characterization to discover candidate gene clusters that encode production of sponge-derived natural products. The multi-omic profiling strategy for sponges that we describe here enables quantitative comparison of sponge metabolomes and microbiomes to address, among other questions, the ecological relevance of sponge natural products and for the phylochemical assignment of previously undescribed sponge identities

Observations on the Mating Behavior of Captive Spotted Sand Bass (Paralabrax maculatofasciatus)

The sex allocation pattern of various populations of spotted sand bass are thought to vary from functional gonochorism to strict protogyny. The development of hypotheses explaining how such a plastic (flexible) strategy has been maintained selectively has been hindered by a general lack of information on reproductive behavior in this species. Therefore, the spawning behavior of adult, wild-caught spotted sand bass were observed in captivity under a variety of densities. Three distinct spawning modes were observed: 1) pair spawning, 2) group spawning, and 3) spawning including a sneaker male. Courtship was characterized by the following sequence: 1) a male or males approach the females, 2) one or more males make contact with the ventro-lateral surface of the female and chase the female, 3) the male contacts the ventro-lateral surface of the female and pushes her through a vertical spawning rush. Spawning behavior involved ephemeral color changes, persistent physical contact initiated by the male, short rushes beginning near structure and ending in a vertical rush with a gamete release. In general, in low density groups, reproductive activity was dominated by a single male that actively excluded smaller males from spawning. The dominant male in these groups exclusively engaged in pair spawning. Individuals in groups of higher density spawned in groups, with no observations of large males monopolizing females. These observations are consistent with the predictions of the size-advantage hypothesis regarding mating strategies in fishes. We propose that these three spawning modes and the frequency with which they occur allow the flexibility seen in the mating strategies of isolated populations of spotted sand bass

Linkage of Marine Bacterial Polyunsaturated Fatty Acid and Long-Chain Hydrocarbon Biosynthesis

Various marine gamma-proteobacteria produce omega-3 polyunsaturated fatty acids, such as eicosapentaenoic acid (20:5, EPA) and docosahexaenoic acid (22:6, DHA), which are incorporated into membrane phospholipids. Five genes, designated pfaABCDE, encode the polyketide/fatty acid synthase necessary for production of these long-chain fatty acids. In addition to de novo biosynthesis of EPA and DHA, the “Pfa synthase” is also involved with production of a long-chain polyunsaturated hydrocarbon product (31:9, PUHC) in conjunction with the oleABCD hydrocarbon biosynthesis pathway. In this work, we demonstrate that OleA mediates the linkage between these two pathways in vivo. Co-expression of pfaA-E along with oleA from Shewanella pealeana in Escherichia coli yielded the expected product, a 31:8 ketone along with a dramatic ∼10-fold reduction in EPA content. The decrease in EPA content was independent of 31:8 ketone production as co-expression of an OleA active site mutant also led to identical decreases in EPA content. We also demonstrate that a gene linked with either pfa and/or ole operons in diverse bacterial lineages, herein designated pfaT, plays a role in maintaining optimal production of Pfa synthase derived products in Photobacterium and Shewanella species

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria

Based on unique, coherent properties of phylogenetic analysis, key amino acid substitutions and structural modeling, we have identified a new class of unusual microbial rhodopsins related to the Anabaena sensory rhodopsin (ASR) protein, including multiple homologs not previously recognized. We propose the name xenorhodopsin for this class, reflecting a taxonomically diverse membership spanning five different Bacterial phyla as well as the Euryarchaeotal class Nanohaloarchaea. The patchy phylogenetic distribution of xenorhodopsin homologs is consistent with historical dissemination through horizontal gene transfer. Shared characteristics of xenorhodopsin-containing microbes include the absence of flagellar motility and isolation from high light habitats

Time-Resolved Ultraviolet Observations of the Globular Cluster X-ray Source in NGC 6624: The Shortest Known Period Binary System

Using the Faint Object Spectrograph (FOS) aboard the Hubble Space Telescope, we have obtained the first time-resolved spectra of the King et al. ultraviolet-bright counterpart to the 11-minute binary X-ray source in the core of the globular cluster NGC 6624. This object cannot be readily observed in the visible, even from HST, due to a much brighter star superposed <0.1'' distant. Our FOS data show a highly statistically significant UV flux modulation with a period of 11.46+-0.04 min, very similar to the 685 sec period of the known X-ray modulation, definitively confirming the association between the King et al. UV counterpart and the intense X-ray source. The UV amplitude is very large compared with the observed X-ray oscillations: X-ray variations are generally reported as 2-3% peak-to-peak, whereas our data show an amplitude of about 16% in the 126-251 nm range. A model for the system by Arons & King predicts periodic UV fluctuations in this shortest-known period binary system, due to the cyclically changing aspect of the X-ray heated face of the secondary star (perhaps a very low mass helium degenerate). However, prior to our observations, this predicted modulation has not been detected. Employing the Arons & King formalism, which invokes a number of different physical assumptions, we infer a system orbital inclination 35deg<i<50 deg. Amongst the three best-studied UV/optical counterparts to the intense globular cluster X-ray sources, two are now thought to consist of exotic double-degenerate ultrashort period binary systems.Comment: 10 pages including 2 figures in Latex (AASTeX 4.0). Accepted for publication in vol. 482 (1997 June 10 issue) of The Astrophysical Journal (Letters

A map of the day-night contrast of the extrasolar planet HD 189733b

"Hot Jupiter" extrasolar planets are expected to be tidally locked because they are close (<0.05 astronomical units, where 1 AU is the average Sun-Earth distance) to their parent stars, resulting in permanent daysides and nightsides. By observing systems where the planet and star periodically eclipse each other, several groups have been able to estimate the temperatures of the daysides of these planets. A key question is whether the atmosphere is able to transport the energy incident upon the dayside to the nightside, which will determine the temperature at different points on the planet's surface. Here we report observations of HD 189733, the closest of these eclipsing planetary systems, over half an orbital period, from which we can construct a 'map' of the distribution of temperatures. We detected the increase in brightness as the dayside of the planet rotated into view. We estimate a minimum brightness temperature of 973 +/- 33 K and a maximum brightness temperature of 1212 +/- 11 K at a wavelength of 8 microns, indicating that energy from the irradiated dayside is efficiently redistributed throughout the atmosphere, in contrast to a recent claim for another hot Jupiter. Our data indicate that the peak hemisphere-integrated brightness occurs 16$\pm$6 degrees before opposition, corresponding to a hot spot shifted east of the substellar point. The secondary eclipse (when the planet moves behind the star) occurs 120 +/- 24 s later than predicted, which may indicate a slightly eccentric orbit.Comment: To appear in the May 10 2007 issue of Nature, 10 pages, 2 black and white figures, 1 colo