all_switchgrass_SNPs_filtered.txt

SNPs identified within the switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Trailblazer, Carthage and Shelter

Pathfinder_transcript_assemblies_representative_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Pathfinder. This file includes only representative transcript

combined_switchgrass_transcript_assemblies_all_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases using seven switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Shelter, Trailblazer and Carthage. This file includes all transcript isoforms

Pathfinder_transcript_assemblies_all_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Pathfinder. This file includes all transcript isoforms

all_switchgrass_SNPs_with_context_sequence.txt

This file contains context sequence surrounding SNPs identified within the switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Trailblazer, Carthage and Shelter

combined_switchgrass_transcript_assemblies_representative_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases using seven switchgrass cultivars Alamo, SG5, Wabasso, Pathfinder, Shelter, Trailblazer and Carthage. This file includes only representative transcript

Carthage_transcript_assemblies_representative_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Carthage. This file includes only representative transcript

Wabasso_transcript_assemblies_representative_isoforms.fasta

RNA-seq transcript assemblies created with Velvet/Oases from the switchgrass cultivar Wabasso. This file includes only representative transcript

Libraries and sequencing generated for <i>Camptotheca acuminata</i>.

1<p>Libraries used in the first, initial de novo assembly.</p>2<p>Libraries only sequenced for expression abundance estimates, reads were not included in de novo assembly.</p>3<p>Libraries used in the second, final de novo assembly.</p><p>M: Million.</p

Monoterpene indole alkaloid pathway.

<p>The key intermediate strictosidine is formed by condensation of tryptamine, which contributes the indole ring, and secologanin, which is produced from the monoterpene geraniol. In various plants, strictosidine is further metabolized to generate over 2,500 monoterpene indole alkaloids. Solid lines indicate single enzymatic steps; dashed lines indicate multiple steps.</p