Effect of transgene introgression site on gene migration from transgenic b. napus to b. rapa [abstract]

Abstract only availableThere is a growing concern of the possible transgenic introgression from GM plants into agricultural weeds, which has stimulated research in the process of crop to weed gene flow. Crop to weed gene flow often involves the hybridization of a polyploidy crop to a diploid weed. An example is canola (Brassica napus with AACC genomes) which can hybridize with B. rapa (AA) to produce fertile triploid F1 hybrids (ACC) in the wild. It is hypothesized that there are "safe sites" on the C genome because the C genome is likely to be lost from wild populations after a few generations of repeated backcrossing with B. rapa. However, there is homoeology between the A and C genomes of Brassica, which allows potential recombination between genomes and the movement of transgenes from the C to A genomes by chromosomal rearrangements. Recent advances in molecular markers and fluorescent in situ hybridization (FISH) now allow us to observe the frequency of homoeologous exchanges following hybridization. Our research is focused on finding safe sites within the B. napus genome which are least likely to be transferred into B. napus and B. rapa hybrids and their progeny. To test this, we have crossed a transgenic B. napus with a natural B. rapa three times to make three different F1events. Then we backcrossed each of the three F1 three times with B. rapa. We are measuring the germination rate of each generation and using transgene specific PCR primers to check the presence or absence of the transgene in hybrids. We will also use molecular cytogenetics (FISH) to count chromosome numbers. This study will help determine the possibilities of a "safe" site in B. napus and offer insight in the mechanisms of crop to weed transgene introgression in B. napus x B. rapa hybrids.MU Monsanto Undergraduate Research Fellowshi

Chromosomal evolution in Brassicacae: Allopolyploidy, aneuploidy and transgene transmission [abstract]

Abstract only availablePolyploidy is a eukaryotic phenomenon common to plants that serves as an evolutionary mechanism for speciation. Diploid species undergo polyploidization through single genome duplication (autopolyploidy) or by the hybridization of genomes from two or more distinct progenitor species (allopolyploidy). Aneuploidy can arise where offspring possess extra or fewer chromosomes than their progenitors. Over successive generations, changes in chromosomal number and rearrangement can lead to speciation or differentiation of ecotypes within a species. Using advanced molecular cytogenetics and fluorescent in situ hybridization (FISH), we can distinguish chromosomes and genomic markers among different ecotypes and species. In the agricultural industry where genetically modified organisms (GMOs) are used, aneuploidy and homoeologous recombination of transgenic elements presents a potential mechanism of moving transgenes from GMO crops into the genomes of wild diploids. These wild diploids then have the potential to become "superweeds" that can disrupt ecological systems. The goal of this study was to investigate the movement of a transgene from an allopolyploid to a diploid in controlled greenhouse crosses. Transgenic Brassica napus allopolyploid plants (AACC) were backcrossed to natural Brassica rapa (AA) recurrently over three generations. We examined each of the three backcross generations for chromosome number and gene transmission. Molecular cytogenetic analysis was performed on flower buds from each backcross, chromosome numbers were recorded and gene transmission was analyzed by PCR. As expected, we found aneuploidy in Brassica napus x Brassica rapa hybrids suggesting potential for homoeologous recombination of transgenes into non-transgenic diploid species. Surprisingly, despite aneuploidy, we also found a high rate of both germination and transmission of the transgene into wild Brassica rapa, suggesting the need to find safe sites in Brassica napus to insert transgenes

Dimming the Lights: 2D Simulations of Deflagrations of Hybrid C/O/Ne White Dwarfs using FLASH

The dimmest and most numerous outlier of the Type Ia supernova population, Type Iax events, is increasingly being found in the results of observational campaigns. There is currently no single accepted model to describe these events. This 2D study explores the viability of modeling Type Iax events as a hybrid C/O/Ne white dwarf progenitor undergoing a deflagration using the multi-physics software FLASH. This hybrid was created using the stellar evolution code MESA, and its C-depleted core and mixed structure have demonstrated lower yields than traditional C/O progenitors in previous deflagration-to-detonation studies. To generate a sample, 30 "realizations" of this simulation were performed, the only difference being the shape of the initial matchhead used to start the deflagration. As consistent with earlier work, these realizations produce the familiar hot dense bound remnant surrounded by sparse ejecta. Our results indicate the majority of the star remains unburned (~70%) and bound (>90%). Our realizations produce total ejecta yields on the order of 10$^{-2}$ - 10$^{-1}$ solar masses, ejected $^{56}$Ni yields on the order of 10$^{-4}$ - 10$^{-2}$ solar masses, and ejecta kinetic energies on the order of 10$^{48}$ - 10$^{49}$ ergs. Compared to yields inferred from recent observations of the dimmest Type Iax events - SN 2007qd, SN 2008ha, SN 2010ae, SN 2019gsc, SN 2019muj, SN 2020kyg, and SN 2021fcg - our simulation produces comparable $^{56}$Ni yields, but too-small total yields and kinetic energies. Reignition of the remnant is also seen in some realizations.Comment: 43 pages, 15 figures, 4 tables. To be published in Ap

Ultralow-loss polaritons in isotopically pure boron nitride.

Conventional optical components are limited to size scales much larger than the wavelength of light, as changes to the amplitude, phase and polarization of the electromagnetic fields are accrued gradually along an optical path. However, advances in nanophotonics have produced ultrathin, so-called 'flat' optical components that beget abrupt changes in these properties over distances significantly shorter than the free-space wavelength. Although high optical losses still plague many approaches, phonon polariton (PhP) materials have demonstrated long lifetimes for sub-diffractional modes in comparison to plasmon-polariton-based nanophotonics. We experimentally observe a threefold improvement in polariton lifetime through isotopic enrichment of hexagonal boron nitride (hBN). Commensurate increases in the polariton propagation length are demonstrated via direct imaging of polaritonic standing waves by means of infrared nano-optics. Our results provide the foundation for a materials-growth-directed approach aimed at realizing the loss control necessary for the development of PhP-based nanophotonic devices

Ultralow-loss polaritons in isotopically pure boron nitride

Conventional optical components are limited to size-scales much larger than the wavelength of light, as changes in the amplitude, phase and polarization of the electromagnetic fields are accrued gradually along an optical path. However, advances in nanophotonics have produced ultra-thin, co-called "flat" optical components that beget abrupt changes in these properties over distances significantly shorter than the free space wavelength. While high optical losses still plague many approaches, phonon polariton (PhP) materials have demonstrated long lifetimes for sub-diffractional modes in comparison to plasmon-polariton-based nanophotonics. We experimentally observe a three-fold improvement in polariton lifetime through isotopic enrichment of hexagonal boron nitride (hBN). Commensurate increases in the polariton propagation length are demonstrated via direct imaging of polaritonic standing waves by means of infrared nano-optics. Our results provide the foundation for a materials-growth-directed approach towards realizing the loss control necessary for the development of PhP-based nanophotonic devices

Ultralow-loss polaritons in isotopically pure boron nitride

Conventional optical components are limited to size scales much larger than the wavelength of light, as changes to the amplitude, phase and polarization of the electromagnetic fields are accrued gradually along an optical path. However, advances in nanophotonics have produced ultrathin, so-called 'flat' optical components that beget abrupt changes in these properties over distances significantly shorter than the free-space wavelength. Although high optical losses still plague many approaches, phonon polariton (PhP) materials have demonstrated long lifetimes for sub-diffractional modes in comparison to plasmon-polariton-based nanophotonics. We experimentally observe a threefold improvement in polariton lifetime through isotopic enrichment of hexagonal boron nitride (hBN). Commensurate increases in the polariton propagation length are demonstrated via direct imaging of polaritonic standing waves by means of infrared nano-optics. Our results provide the foundation for a materials-growth-directed approach aimed at realizing the loss control necessary for the development of PhP-based nanophotonic devices