BYOL-S: Learning Self-supervised Speech Representations by Bootstrapping

Methods for extracting audio and speech features have been studied since pioneering work on spectrum analysis decades ago. Recent efforts are guided by the ambition to develop general-purpose audio representations. For example, deep neural networks can extract optimal embeddings if they are trained on large audio datasets. This work extends existing methods based on self-supervised learning by bootstrapping, proposes various encoder architectures, and explores the effects of using different pre-training datasets. Lastly, we present a novel training framework to come up with a hybrid audio representation, which combines handcrafted and data-driven learned audio features. All the proposed representations were evaluated within the HEAR NeurIPS 2021 challenge for auditory scene classification and timestamp detection tasks. Our results indicate that the hybrid model with a convolutional transformer as the encoder yields superior performance in most HEAR challenge tasks.Comment: Submitted to HEAR-PMLR 202

Blood virosphere in febrile Tanzanian children

Viral infections are the leading cause of childhood acute febrile illnesses motivating consultation in sub-Saharan Africa. The majority of causal viruses are never identified in low-resource clinical settings as such testing is either not part of routine screening or available diagnostic tools have limited ability to detect new/unexpected viral variants. An in-depth exploration of the blood virome is therefore necessary to clarify the potential viral origin of fever in children. Metagenomic next-generation sequencing is a powerful tool for such broad investigations, allowing the detection of RNA and DNA viral genomes. Here, we describe the blood virome of 816 febrile children (<5 years) presenting at outpatient departments in Dar es Salaam over one-year. We show that half of the patients (394/816) had at least one detected virus recognized as causes of human infection/disease (13.8% enteroviruses (enterovirus A, B, C, and rhinovirus A and C), 12% rotaviruses, 11% human herpesvirus type 6). Additionally, we report the detection of a large number of viruses (related to arthropod, vertebrate or mammalian viral species) not yet known to cause human infection/disease, highlighting those who should be on the radar, deserve specific attention in the febrile paediatric population and, more broadly, for surveillance of emerging pathogens.Trial registration: ClinicalTrials.gov identifier: NCT02225769