Novel Adaptive Photosynthetic Characteristics of Mesophotic Symbiotic Microalgae within the Reef-Building Coral, Stylophora pistillata

Photosynthetic coral reef structures extend from the shallow sundrenched waters to the dimly lit, “twilight” mesophotic depths. For their resident endosymbiotic dinoflagellates, primarily from the genus Symbiodinium spp., this represents a photic environment that varies ~15-fold in intensity and also differs in spectral composition. We examined photosynthesis in the scleractinian coral Stylophora pistillata in shallow (3 m) and mesophotic settings (65 m) in the northern Red Sea. Symbiodinium spp. in corals originating from the mesophotic environment consistently performed below their photosynthetic compensation point and also exhibited distinct light harvesting antenna organization. In addition, the non-photochemical quenching activity of Symbiodinium spp. from mesophotic corals was shown to be considerably lower than those found in shallow corals, showing they have fewer defenses to high-light settings. Over a period of almost 4 years, we extensively utilized closed circuit Trimix rebreather diving to perform the study. Phylogenetic analysis showed that shallow corals (3 m) transplanted to a deep reef environment (65 m) maintained their initial Symbiodinium spp. community (clade A), rather than taking on deep low-light clades (clade C), demonstrating that shallow S. pistillata acclimate to low-light mesophotic environments while maintaining their shallow photosynthetic traits. Mesophotic corals exhibited static depth-related chlorophyll content per cell, a decrease in PSI activity and enhanced sigmoidal fluorescence rise kinetics. The sigmoidal fluorescence rise kinetics we observed in mesophotic corals is an indication of energy transfer between photosynthetic units. We postulate that at mesophotic depths, a community of adapted Symbiodinium spp. utilize a unique adaptation to lower light conditions by shifting their light harvesting to a PSII based system, where PSII is structured near PSI, with additional PCP soluble antenna also trapping light that is funneled to the PSI reaction center. In this study, we provide evidence that mesophotic Symbiodinium spp. have developed novel adaptive low-light characteristics consisting of a cooperative system for excitation energy transfer between photosynthetic units that maximizes light utilization

Conformal Prediction is Robust to Dispersive Label Noise

We study the robustness of conformal prediction, a powerful tool for uncertainty quantification, to label noise. Our analysis tackles both regression and classification problems, characterizing when and how it is possible to construct uncertainty sets that correctly cover the unobserved noiseless ground truth labels. We further extend our theory and formulate the requirements for correctly controlling a general loss function, such as the false negative proportion, with noisy labels. Our theory and experiments suggest that conformal prediction and risk-controlling techniques with noisy labels attain conservative risk over the clean ground truth labels except in adversarial cases. In such cases, we can also correct for noise of bounded size in the conformal prediction algorithm in order to ensure achieving the correct risk of the ground truth labels without score or data regularity

Novel adaptive photosynthetic characteristics of mesophotic symbiotic microalgae within the reef-building coral, Stylophora pistillata

Photosynthetic coral reef structures extend from the shallow sundrenched waters to the dimly lit, twilight mesophotic depths. For their resident endosymbiotic dinoflagellates, primarily from the genus Symbiodinium spp., this represents a photic environment that varies ~15 fold in intensity and also differs in spectral composition. We examined photosynthesis in the scleractinian coral Stylophora pistillata in shallow (3 m) and mesophotic settings (65m) in the northern Red Sea. Symbiodinium spp. in corals originating from the mesophotic environment consistently performed below their photosynthetic compensation point and also exhibited distinct light harvesting antenna organization. In addition, the non-photochemical quenching activity of Symbiodinium spp. from mesophotic corals was shown to be considerably lower than those found in shallow corals, showing they have fewer defenses to high-light settings. Over a period of almost four years, we extensively utilized closed circuit Trimix rebreather diving to perform the study. Phylogenetic analysis showed that shallow corals (3m) transplanted to a deep reef environment (65 m) maintained their initial Symbiodinium spp. community (clade A), rather than taking on deep low-light clades (clade C), demonstrating that shallow S. pistillata acclimate to low-light mesophotic environments while maintaining their shallow photosynthetic traits. Mesophotic corals exhibited static depth-related chlorophyll content per cell, a decrease in PSI activity and enhanced sigmoidal fluorescence rise kinetics. The sigmoidal fluorescence rise kinetics we observed in mesophotic corals is an indication of energy transfer between photosynthetic units. We postulate that at mesophotic depths, a community of adapted Symbiodinium spp. utilize a unique adaptation to lower light conditions by shifting their light harvesting to a PSII based system, where PSII is structured near PSI, with additional PCP soluble antenna also trapping light that is funneled to the PSI reaction center. In this study, we provide evidence that mesophotic Symbiodinium spp. have developed novel adaptive low-light characteristics consisting of a cooperative system for excitation energy transfer between photosynthetic units that maximizes light utilization

FIGURE 1 in Gymnothorax baranesi, a new moray eel (Anguilliformes: Muraenidae) from the Red Sea

FIGURE 1. Gymnothorax baranesi, holotype, 857 mm TL, HUJ 18976

Descending to the twilight-zone: changes in coral reef fish assemblages along a depth gradient down to 65 m

In contrast to the abundance of literature on the relationship between fish assemblages and habitat structure in the upper 30 in of coral reefs, the deeper (>40 m) parts of coral reefs are rarely studied. We examined changes in reef fish diversity and habitat structure along an increasing depth gradient, including the unknown deep reef. We ran visual and video transects along a substantial depth gradient (0 to 65 in) in the northern Red Sea and extended the known depth distribution for 48 reef species. We found a change in assemblage composition highly correlated to both the depth gradient and a reduction in the abundance of branching corals with depth. The number of reef fish species declined with depth and we also measured a high species turnover as measured by beta diversity (beta(t), beta(w)) in the deep reef. This pattern is mainly due to the replacement of the abundant damselfishes in the shallow reef, which prey on zooplankton, by zooplanktivorous sea basses and wrasses in the deep reef. The steep reduction in branching corals, which most damselfishes use for cover, may be the main factor contributing to this change. We found a peak in species richness (alpha diversity) at 30 m, a peak in beta(w) at 50 to 65 in, and peaks in beta(t) at 30 to 50 in and 50 to 65 m. The 30 in depth stratum shows species of both shallow and deep assemblages generating a transition zone with characters of both deep and shallow habitats. The fish assemblage continues to change with depth, and future research will determine if there exists a depth threshold at which the assemblage will stabilize

Grazing pressure on coral reefs decreases across a wide depth gradient in the Gulf of Aqaba, Red Sea

Algae are an essential component of healthy coral reefs and serve as the base of the food chain and as a living habitat for numerous organisms. Herbivorous fish play an important role in coral reef ecology by mediating competition between fast-growing algae and relatively slow-growing corals. However, because of diving-related difficulties, the importance of herbivory in deep mesophotic coral reefs (30 to 150 m) remains largely unknown. We examined the relationship between herbivores and algae along a depth gradient down to 65 m, and evaluated grazing pressure along the depth gradient. We visually assessed the abundance of herbivorous fish along the depth gradient and estimated fish biomass. We measured in situ turf algae growth rates and performed experimental assessments of grazing pressure using settlement plates and bioassays. We discovered that, while both algal growth and fish density decrease with depth, the decrease in grazing pressure is steeper, with a consumption o